Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RGU78_RS15240 Genome accession   NZ_CP133712
Coordinates   3171816..3172226 (-) Length   136 a.a.
NCBI ID   WP_025466948.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CRAb1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3166816..3177226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGU78_RS15210 (RGU78_15235) - 3166902..3167171 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  RGU78_RS15215 (RGU78_15240) rapZ 3167168..3168019 (-) 852 WP_000821671.1 RNase adapter RapZ -
  RGU78_RS15220 (RGU78_15245) panC 3168042..3168890 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  RGU78_RS15225 (RGU78_15250) panB 3168894..3169703 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  RGU78_RS15230 (RGU78_15255) folK 3169749..3170231 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RGU78_RS15235 (RGU78_15260) pcnB 3170228..3171691 (-) 1464 WP_001194206.1 polynucleotide adenylyltransferase PcnB -
  RGU78_RS15240 (RGU78_15265) comEA 3171816..3172226 (-) 411 WP_025466948.1 ComEA family DNA-binding protein Machinery gene
  RGU78_RS15245 (RGU78_15270) mazG 3172195..3173001 (-) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  RGU78_RS15250 (RGU78_15275) - 3173113..3173886 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  RGU78_RS15255 (RGU78_15280) - 3173931..3176237 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15733.02 Da        Isoelectric Point: 10.3828

>NTDB_id=876024 RGU78_RS15240 WP_025466948.1 3171816..3172226(-) (comEA) [Acinetobacter baumannii strain CRAb1]
MQYSMRFWKNKYFILIMLCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDFTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=876024 RGU78_RS15240 WP_025466948.1 3171816..3172226(-) (comEA) [Acinetobacter baumannii strain CRAb1]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTATTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCAGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTTTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

43.511

96.324

0.419