Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   RFN66_RS20500 Genome accession   NZ_CP133705
Coordinates   3939520..3940677 (-) Length   385 a.a.
NCBI ID   WP_020453119.1    Uniprot ID   A0A6I7TVP7
Organism   Bacillus paralicheniformis strain CP47     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3934520..3945677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS20470 (RFN66_20470) - 3934758..3935177 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  RFN66_RS20475 (RFN66_20475) comFC 3935236..3935973 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  RFN66_RS20480 (RFN66_20480) - 3935930..3936214 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  RFN66_RS20485 (RFN66_20485) comFA 3936269..3937663 (-) 1395 WP_309539574.1 DEAD/DEAH box helicase Machinery gene
  RFN66_RS20490 (RFN66_20490) - 3937787..3938629 (-) 843 WP_020453118.1 DegV family protein -
  RFN66_RS20495 (RFN66_20495) degU 3938749..3939438 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  RFN66_RS20500 (RFN66_20500) degS 3939520..3940677 (-) 1158 WP_020453119.1 histidine kinase Regulator
  RFN66_RS20505 (RFN66_20505) - 3940900..3941538 (+) 639 WP_095292066.1 YigZ family protein -
  RFN66_RS20510 (RFN66_20510) - 3941553..3942632 (+) 1080 WP_026580176.1 LCP family protein -
  RFN66_RS20515 (RFN66_20515) - 3942685..3943053 (-) 369 WP_026580177.1 hypothetical protein -
  RFN66_RS20520 (RFN66_20520) - 3943162..3944226 (-) 1065 WP_020453123.1 glycosyltransferase family 4 protein -
  RFN66_RS20525 (RFN66_20525) - 3944357..3945544 (-) 1188 WP_026580178.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44650.34 Da        Isoelectric Point: 6.7862

>NTDB_id=875939 RFN66_RS20500 WP_020453119.1 3939520..3940677(-) (degS) [Bacillus paralicheniformis strain CP47]
MSVSKMDSKVLDSIIMKMLKTVDGSKDEVFQIGEQSRQQYEGLVEELKQIKQQVNEVIDLGDRLEVHARHARNRLSEVSR
NFHKFSEEEIREAYEKAHKLQVELTMIQQREKQLREKRDDLERRLLGLQEIIERSEGLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDKGTEEGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEDYHGKAKIHFQCIGESEDRRIAPRFEVALFRLAQEAVTNALKHSESTEIHVKVEV
TKDFVTLIIKDNGNGFDLKEVKGKKNKSFGLLGMKERVDLLEGSMTIDSKIGLGTFILIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=875939 RFN66_RS20500 WP_020453119.1 3939520..3940677(-) (degS) [Bacillus paralicheniformis strain CP47]
GTGAGTGTTTCCAAAATGGACTCCAAAGTTTTAGATTCAATCATTATGAAGATGTTAAAAACGGTTGATGGGAGCAAGGA
TGAGGTCTTTCAAATCGGAGAGCAGTCCCGTCAGCAATATGAAGGCTTGGTAGAAGAGCTGAAGCAGATTAAACAGCAGG
TCAACGAAGTCATCGATCTTGGAGACAGGCTGGAAGTGCATGCCCGCCATGCGCGAAACCGCTTGTCTGAGGTCAGCAGA
AACTTTCATAAATTCAGTGAAGAAGAGATTCGCGAAGCTTATGAAAAAGCCCACAAACTGCAGGTTGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGAGAGAGAAGCGTGATGATCTGGAACGGCGCCTTTTGGGGCTTCAGGAAATCATCGAGC
GTTCAGAAGGGCTTGTCAGCCAGATTACCGTCGTCTTAAACTATTTAAATCAGGATCTGCGCCAGGTTGGCGTTCTCCTA
GAAGATGCGCAGGCCAAACAGGATTTCGGACTGCGGATCATCGAAGCCCAAGAGGAAGAAAGAAAAAGGGTCTCAAGGGA
AATCCACGACGGCCCTGCGCAAATGCTGGCCAACGTCATGATGAGATCTGAGCTGATCGAACGCATCTTCAGAGACAAAG
GAACAGAAGAAGGCTTTCAGGAAATTAGAAACCTCCGGCAAAACGTCAGAAATGCTCTTTATGAAGTCAGAAGAATCATT
TATGATTTAAGACCGATGGCTTTAGACGATTTGGGATTGATACCGACGCTCAGAAAATACTTGAACACGATCGAAGATTA
TCATGGAAAAGCAAAGATCCATTTCCAATGCATCGGAGAATCCGAAGATAGAAGAATAGCACCGCGGTTTGAGGTTGCAC
TTTTCCGGCTTGCACAGGAAGCAGTGACAAACGCCTTAAAACACTCCGAATCAACTGAGATTCATGTTAAAGTAGAAGTG
ACAAAAGATTTTGTGACGTTGATTATCAAAGACAATGGAAACGGCTTTGACTTAAAAGAAGTTAAAGGCAAGAAGAACAA
ATCTTTCGGTCTGCTAGGTATGAAAGAAAGAGTCGATTTGCTCGAAGGTTCAATGACAATCGATTCGAAAATAGGTCTTG
GGACATTTATTTTGATTAAAGTTCCGCTGTCTTTGTAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(292-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7TVP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

89.351

100

0.894