Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RFN66_RS20495 Genome accession   NZ_CP133705
Coordinates   3938749..3939438 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus paralicheniformis strain CP47     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3933749..3944438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS20460 (RFN66_20460) - 3933917..3934393 (-) 477 WP_075212712.1 flagellar protein FlgN -
  RFN66_RS20465 (RFN66_20465) flgM 3934412..3934678 (-) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  RFN66_RS20470 (RFN66_20470) - 3934758..3935177 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  RFN66_RS20475 (RFN66_20475) comFC 3935236..3935973 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  RFN66_RS20480 (RFN66_20480) - 3935930..3936214 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  RFN66_RS20485 (RFN66_20485) comFA 3936269..3937663 (-) 1395 WP_309539574.1 DEAD/DEAH box helicase Machinery gene
  RFN66_RS20490 (RFN66_20490) - 3937787..3938629 (-) 843 WP_020453118.1 DegV family protein -
  RFN66_RS20495 (RFN66_20495) degU 3938749..3939438 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  RFN66_RS20500 (RFN66_20500) degS 3939520..3940677 (-) 1158 WP_020453119.1 histidine kinase Regulator
  RFN66_RS20505 (RFN66_20505) - 3940900..3941538 (+) 639 WP_095292066.1 YigZ family protein -
  RFN66_RS20510 (RFN66_20510) - 3941553..3942632 (+) 1080 WP_026580176.1 LCP family protein -
  RFN66_RS20515 (RFN66_20515) - 3942685..3943053 (-) 369 WP_026580177.1 hypothetical protein -
  RFN66_RS20520 (RFN66_20520) - 3943162..3944226 (-) 1065 WP_020453123.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=875938 RFN66_RS20495 WP_003185730.1 3938749..3939438(-) (degU) [Bacillus paralicheniformis strain CP47]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=875938 RFN66_RS20495 WP_003185730.1 3938749..3939438(-) (degU) [Bacillus paralicheniformis strain CP47]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTGGTAA
TCATGGATATTAATATGCCGAATGTAAACGGCGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGACGATGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGACACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACTCATA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACCAGAAGGGAATGCGAGGTTCTGCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987