Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RFN66_RS20485 Genome accession   NZ_CP133705
Coordinates   3936269..3937663 (-) Length   464 a.a.
NCBI ID   WP_309539574.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CP47     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3931269..3942663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS20450 (RFN66_20450) flgL 3931456..3932367 (-) 912 WP_020453110.1 flagellar hook-associated protein FlgL -
  RFN66_RS20455 (RFN66_20455) flgK 3932378..3933901 (-) 1524 WP_145625002.1 flagellar hook-associated protein FlgK -
  RFN66_RS20460 (RFN66_20460) - 3933917..3934393 (-) 477 WP_075212712.1 flagellar protein FlgN -
  RFN66_RS20465 (RFN66_20465) flgM 3934412..3934678 (-) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  RFN66_RS20470 (RFN66_20470) - 3934758..3935177 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  RFN66_RS20475 (RFN66_20475) comFC 3935236..3935973 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  RFN66_RS20480 (RFN66_20480) - 3935930..3936214 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  RFN66_RS20485 (RFN66_20485) comFA 3936269..3937663 (-) 1395 WP_309539574.1 DEAD/DEAH box helicase Machinery gene
  RFN66_RS20490 (RFN66_20490) - 3937787..3938629 (-) 843 WP_020453118.1 DegV family protein -
  RFN66_RS20495 (RFN66_20495) degU 3938749..3939438 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  RFN66_RS20500 (RFN66_20500) degS 3939520..3940677 (-) 1158 WP_020453119.1 histidine kinase Regulator
  RFN66_RS20505 (RFN66_20505) - 3940900..3941538 (+) 639 WP_095292066.1 YigZ family protein -
  RFN66_RS20510 (RFN66_20510) - 3941553..3942632 (+) 1080 WP_026580176.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 53028.76 Da        Isoelectric Point: 9.7663

>NTDB_id=875937 RFN66_RS20485 WP_309539574.1 3936269..3937663(-) (comFA) [Bacillus paralicheniformis strain CP47]
MIHIEHPASYSCELRSCLEQRHLLKSELPFPEPVIDWHIQEGLIKTEEGIKKTKRGFVCLRCGQHERFCFARYPCYRCNK
CCVYCRACVMMGRVSECTSLLTWRGHGRHEWAPVYTEWKGVLSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNGLRVCIATPRTDVVLELEPRFRHAFPGVEIAALYGGSPDVGTLSPLVISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSRDMKKRAESGKLHTVRIPARFHRSPLPEPTLIWCGNWERGLKRRKVPLRLK
KWLFKHQELQHPVFLFVPSIPVLKTVVSLLKKETFRAEGVYAEDPERNEKVNRFRKSKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFSESALVQMAGRAGRHPEHTDGDVCFFHHGRTKSMNAARRHIQYMNKLSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=875937 RFN66_RS20485 WP_309539574.1 3936269..3937663(-) (comFA) [Bacillus paralicheniformis strain CP47]
GTGATTCACATCGAACATCCGGCATCCTATTCCTGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCCGGAACCTGTCATTGATTGGCATATCCAAGAAGGCCTGATAAAAACGGAGGAAGGCATTAAAAAAACGA
AGAGAGGCTTTGTTTGCTTGAGGTGCGGCCAGCACGAGCGCTTCTGTTTCGCTCGATATCCTTGCTATAGGTGCAATAAA
TGCTGCGTGTACTGCCGAGCCTGTGTCATGATGGGCAGGGTGAGCGAGTGTACGTCTCTGTTGACTTGGCGTGGACATGG
CAGACATGAATGGGCGCCTGTTTACACGGAGTGGAAAGGCGTACTTTCAGCCGGTCAGGAAAAAGCGGCAAAATCTATTA
TCGATGCTATACGCAGGAAAGAAGAGCTGTTGATCTGGGCGGTTTGCGGATCGGGAAAAACGGAACTTCTTTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGTTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTTGTGCTTGAGCTTGAACCGCG
GTTTCGCCACGCCTTTCCCGGGGTGGAAATCGCCGCTTTATACGGAGGAAGCCCAGACGTTGGAACTCTCTCGCCGCTTG
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAAGTGGATGCTTTTCCG
TATTCTATTGATAATACGCTGCAATACGCTGTTAAAAAATCGGCCAAACGGCAAAGCGCACATATCTATTTAACCGCCAC
GCCTTCTAGAGATATGAAGAAAAGGGCTGAGAGCGGAAAGCTGCACACCGTCCGTATTCCCGCAAGATTCCACCGCAGCC
CGCTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGGAAAGGGGTTTGAAACGAAGAAAAGTTCCTTTACGCCTCAAA
AAATGGCTTTTTAAGCACCAGGAACTGCAGCATCCGGTTTTTCTGTTTGTTCCCTCTATCCCTGTTCTTAAAACCGTGGT
CAGTCTGCTGAAAAAGGAAACATTTCGCGCAGAAGGAGTCTATGCCGAAGACCCTGAGAGAAATGAAAAAGTGAACCGGT
TTAGGAAAAGTAAGCTTGAGGTGCTCGTGACGACAACGATTTTGGAAAGAGGTGTAACCGTCAAAAAAGCACAGGTTGGA
GTATTGGGGGCAGAGTCGGCTGTTTTTTCGGAAAGCGCTCTTGTCCAAATGGCCGGCAGAGCCGGCAGGCATCCTGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATCACGGCAGGACAAAGTCGATGAATGCGGCACGACGTCATATTCAATATATGA
ATAAACTGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(122-270)

Helicase conserved C-terminal domain (Helicase_C)

(318-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

57.205

98.707

0.565