Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   TOL5_RS12885 Genome accession   NZ_AP024708
Coordinates   2761662..2762372 (+) Length   236 a.a.
NCBI ID   WP_004831157.1    Uniprot ID   -
Organism   Acinetobacter sp. Tol 5     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2756662..2767372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TOL5_RS12865 (TOL5_25310) - 2756977..2757909 (+) 933 WP_046760268.1 family 2A encapsulin nanocompartment shell protein -
  TOL5_RS12870 (TOL5_25320) - 2757884..2759833 (+) 1950 WP_151797239.1 family 2A encapsulin nanocompartment cargo protein cysteine desulfurase -
  TOL5_RS12875 (TOL5_25330) - 2760144..2760908 (+) 765 WP_221260395.1 peptidoglycan DD-metalloendopeptidase family protein -
  TOL5_RS12880 (TOL5_25340) - 2761088..2761510 (-) 423 WP_004831156.1 OsmC family protein -
  TOL5_RS12885 (TOL5_25350) crp 2761662..2762372 (+) 711 WP_004831157.1 cAMP-activated global transcriptional regulator CRP Regulator
  TOL5_RS12890 (TOL5_25360) - 2762694..2763743 (+) 1050 WP_004831158.1 NADP(H)-dependent aldo-keto reductase -
  TOL5_RS12895 (TOL5_25370) - 2763856..2764641 (-) 786 WP_004831159.1 M48 family metallopeptidase -
  TOL5_RS12900 (TOL5_25380) - 2764754..2765059 (-) 306 WP_004831161.1 phosphoethanolamine transferase domain-containing protein -
  TOL5_RS12905 (TOL5_25390) - 2765201..2765992 (-) 792 WP_004831162.1 M48 family metallopeptidase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26639.24 Da        Isoelectric Point: 4.7528

>NTDB_id=87592 TOL5_RS12885 WP_004831157.1 2761662..2762372(+) (crp) [Acinetobacter sp. Tol 5]
MSSNFAQLSTDALSPGQLPESVKALLKRAHINRFPKRSTIIDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEQNPQRTAEVRTRDVCEIAEISYDNFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEESKFSEDEYNNDDE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=87592 TOL5_RS12885 WP_004831157.1 2761662..2762372(+) (crp) [Acinetobacter sp. Tol 5]
ATGTCTTCTAATTTTGCACAACTTAGTACAGATGCTTTGTCACCTGGTCAATTACCTGAGTCAGTCAAAGCTTTGCTCAA
GAGAGCCCACATCAATCGTTTTCCTAAACGCTCAACAATCATTGATGCAGGTTCAGAGTCAAAATCACTGTATTTAATTT
TAAAAGGTTCAGTTTCAATTATTTTACGCGAAGATGATGAGCGTGAAATCGTTGTTGCCTATTTGAACCCTGGGGATTTT
TTCGGAGAAATGGGTTTATTTGAGCAAAACCCACAACGTACAGCCGAGGTCAGAACTCGTGACGTATGTGAAATCGCAGA
GATTTCATATGACAATTTCCACGAAATCAGTAAACAATACCCTGACTTAAGTTATGCAGTATTTGCACAACTTGTTCGTC
GCTTAAAGAATACAACACGTAAAGTGACTGACCTTGCATTTATTGATGTCTCTGGTCGTATTGCACGTTGCTTGATTGAT
CTTTCTGCGCAACCTGAAGCGATGATTTTACCAAATGGTCGTCAGATTCGTATTACTCGTCAAGAAATTGGTCGCATCGT
AGGTTGCTCACGTGAAATGGTAGGGCGTGTATTAAAAACGCTTGAAGAGCAAGGTATGATCGAGACTGATGGTAAGGCAA
TTTTAATTTTTGATGCGTCTTTAGAAGAGTCTAAATTCTCTGAAGATGAATATAACAATGATGATGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

89.787

99.576

0.894
  crp Vibrio cholerae strain A1552

48.058

87.288

0.419
  crp Haemophilus influenzae Rd KW20

48.718

82.627

0.403

Multiple sequence alignment