Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RFN66_RS05175 Genome accession   NZ_CP133705
Coordinates   1008809..1009600 (+) Length   263 a.a.
NCBI ID   WP_020450621.1    Uniprot ID   A0AAW6KG74
Organism   Bacillus paralicheniformis strain CP47     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1003809..1014600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS05145 (RFN66_05145) - 1004989..1005885 (+) 897 WP_106071182.1 PhzF family phenazine biosynthesis isomerase -
  RFN66_RS05150 (RFN66_05150) - 1005988..1006566 (+) 579 WP_020450617.1 nitroreductase -
  RFN66_RS05155 (RFN66_05155) - 1006600..1006794 (-) 195 WP_020450618.1 YfhD family protein -
  RFN66_RS05160 (RFN66_05160) - 1006863..1006976 (-) 114 WP_023856002.1 YfhE family protein -
  RFN66_RS05165 (RFN66_05165) - 1007044..1007574 (-) 531 WP_020450619.1 GNAT family N-acetyltransferase -
  RFN66_RS05170 (RFN66_05170) - 1007841..1008740 (-) 900 WP_224067404.1 TIGR01777 family oxidoreductase -
  RFN66_RS05175 (RFN66_05175) recX 1008809..1009600 (+) 792 WP_020450621.1 recombination regulator RecX Regulator
  RFN66_RS05180 (RFN66_05180) - 1009605..1009919 (+) 315 WP_003179919.1 YfhH family protein -
  RFN66_RS05185 (RFN66_05185) - 1009949..1010077 (-) 129 WP_369878957.1 YpzG family protein -
  RFN66_RS05190 (RFN66_05190) - 1010146..1010295 (-) 150 WP_003179924.1 small, acid-soluble spore protein K -
  RFN66_RS05195 (RFN66_05195) - 1010426..1010695 (+) 270 WP_026580622.1 YfhJ family protein -
  RFN66_RS05200 (RFN66_05200) - 1011438..1012397 (+) 960 WP_020450623.1 glycosyltransferase family 2 protein -
  RFN66_RS05205 (RFN66_05205) - 1012366..1012767 (+) 402 WP_020450624.1 GtrA family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30364.60 Da        Isoelectric Point: 6.7703

>NTDB_id=875885 RFN66_RS05175 WP_020450621.1 1008809..1009600(+) (recX) [Bacillus paralicheniformis strain CP47]
MPYITKISAQKNNEERVNIFLDEKYAFSVDLDVLVKFDLRKGKELDELDIIEIQYGDDVKKGFKKALDYLSYRMRSTKEV
KDHLKKKDVADSAITEILHMLKGYKYLDDREFAAAYVSTHRKTSGKGPDVLFRELKLKGIDDELIQEALSSFSFSDQVEA
AVKHAEKVLKKEKKLSSKETKQAIEQHLVRKGFSFDVISAALQETDYENDDSAEREALEKQGEKAMKRCGYDGSYETKMK
VKQHLFRKGFSIDMIDQFLDEKG

Nucleotide


Download         Length: 792 bp        

>NTDB_id=875885 RFN66_RS05175 WP_020450621.1 1008809..1009600(+) (recX) [Bacillus paralicheniformis strain CP47]
ATGCCATATATTACAAAGATTTCTGCCCAGAAAAACAATGAAGAGCGGGTCAATATTTTTCTGGATGAAAAGTATGCGTT
CAGCGTCGACCTGGACGTGCTCGTCAAGTTTGACCTGCGAAAAGGCAAAGAGCTTGATGAGCTTGATATCATTGAGATTC
AGTACGGAGACGACGTTAAAAAAGGGTTCAAAAAAGCGCTCGATTATTTGTCATACCGGATGCGCTCGACAAAGGAAGTT
AAAGACCATCTCAAGAAAAAAGACGTCGCAGACTCCGCGATCACAGAAATCCTGCATATGCTTAAAGGTTATAAATATTT
GGACGACCGCGAATTTGCGGCTGCATATGTCAGCACCCACAGAAAAACGAGCGGCAAAGGCCCCGATGTCCTATTCAGAG
AGCTTAAATTGAAAGGGATCGATGATGAACTGATTCAGGAAGCGCTCAGTTCGTTTTCGTTTTCCGATCAGGTCGAGGCC
GCGGTCAAGCATGCGGAAAAAGTGCTGAAAAAAGAAAAAAAGCTGTCCTCCAAAGAGACGAAACAGGCCATCGAACAGCA
CCTTGTCAGAAAGGGGTTCTCCTTCGATGTCATCTCGGCCGCGCTTCAGGAAACGGATTACGAAAACGACGACAGCGCAG
AAAGGGAAGCGCTTGAGAAGCAAGGGGAAAAAGCGATGAAGAGGTGCGGTTATGACGGATCATACGAAACGAAAATGAAG
GTCAAACAGCATCTGTTCAGAAAAGGCTTTTCAATCGACATGATTGATCAATTTTTAGATGAAAAGGGATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

70.498

99.24

0.7