Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RFN65_RS18960 Genome accession   NZ_CP133703
Coordinates   3665228..3666178 (-) Length   316 a.a.
NCBI ID   WP_015382768.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3660228..3671178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS18940 (RFN65_18940) cdaE 3661098..3662516 (+) 1419 WP_015382772.1 MDR family MFS transporter -
  RFN65_RS18945 (RFN65_18945) yclQ 3662561..3663514 (-) 954 WP_309529870.1 petrobactin ABC transporter substrate-binding protein YclQ -
  RFN65_RS18950 (RFN65_18950) yclP 3663536..3664294 (-) 759 WP_003234487.1 petrobactin ABC transporter ATP-binding protein YclP -
  RFN65_RS18955 (RFN65_18955) yclO 3664288..3665235 (-) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -
  RFN65_RS18960 (RFN65_18960) ceuB 3665228..3666178 (-) 951 WP_015382768.1 petrobactin ABC transporter permease YclN Machinery gene
  RFN65_RS18965 (RFN65_18965) thrD 3666563..3667927 (+) 1365 WP_063336058.1 aspartate kinase -
  RFN65_RS18970 (RFN65_18970) yczN 3668080..3668193 (+) 114 WP_014478831.1 YjcZ family sporulation protein -
  RFN65_RS18975 (RFN65_18975) yczM 3668275..3668364 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  RFN65_RS18980 (RFN65_18980) phrC 3668464..3668586 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  RFN65_RS18985 (RFN65_18985) rapC 3668570..3669718 (-) 1149 WP_251218015.1 response regulator aspartate phosphatase RapC Regulator

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34885.30 Da        Isoelectric Point: 9.9364

>NTDB_id=875863 RFN65_RS18960 WP_015382768.1 3665228..3666178(-) (ceuB) [Bacillus subtilis strain CP35]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLIAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=875863 RFN65_RS18960 WP_015382768.1 3665228..3666178(-) (ceuB) [Bacillus subtilis strain CP35]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGTGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTGTCA
TCGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAACAGATCAGCAGAAATAAATTCGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCTCGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GATTGCGTTTGTCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGCTTTTCTGTCAACCTAGGCC
TCAAGTACAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCCCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCTAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
TGCGCTGTTGGGAGCGGTGTTTGTGCTGTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTACGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528