Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   RFN65_RS03005 Genome accession   NZ_CP133703
Coordinates   594198..594920 (+) Length   240 a.a.
NCBI ID   WP_157799620.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 589198..599920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS02980 (RFN65_02980) degS 589509..590666 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  RFN65_RS02985 (RFN65_02985) degU 590749..591438 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RFN65_RS02990 (RFN65_02990) fakBA 591536..592381 (+) 846 WP_309530045.1 DegV family protein -
  RFN65_RS02995 (RFN65_02995) comFA 592487..593878 (+) 1392 WP_309530046.1 ATP-dependent helicase ComFA Machinery gene
  RFN65_RS03000 (RFN65_03000) comFB 593938..594234 (+) 297 WP_015483764.1 late competence protein ComFB -
  RFN65_RS03005 (RFN65_03005) comFC 594198..594920 (+) 723 WP_157799620.1 comF operon protein ComFC Machinery gene
  RFN65_RS03010 (RFN65_03010) yvyF 594994..595413 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  RFN65_RS03015 (RFN65_03015) flgM 595494..595760 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  RFN65_RS03020 (RFN65_03020) flgN 595776..596258 (+) 483 WP_014481048.1 flagellar protein FlgN -
  RFN65_RS03025 (RFN65_03025) flgK 596277..597800 (+) 1524 WP_063334746.1 flagellar hook-associated protein FlgK -
  RFN65_RS03030 (RFN65_03030) flgL 597811..598707 (+) 897 WP_014478126.1 flagellar hook-associated protein FlgL -
  RFN65_RS03035 (RFN65_03035) yviE 598755..599330 (+) 576 WP_063334745.1 DUF6470 family protein -
  RFN65_RS03040 (RFN65_03040) fliW 599351..599782 (+) 432 WP_309530047.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27563.83 Da        Isoelectric Point: 9.1388

>NTDB_id=875807 RFN65_RS03005 WP_157799620.1 594198..594920(+) (comFC) [Bacillus subtilis strain CP35]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSLTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSTEGMNIILIDDLYTTGATLHFAARCLLEKGNAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=875807 RFN65_RS03005 WP_157799620.1 594198..594920(+) (comFC) [Bacillus subtilis strain CP35]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTGTGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTTAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTTCTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGACACAAAAAATAATTCAACAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAACGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979