Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RFN65_RS02985 Genome accession   NZ_CP133703
Coordinates   590749..591438 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain CP35     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 585749..596438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS02965 (RFN65_02965) tagO 586315..587391 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  RFN65_RS02970 (RFN65_02970) tagV 587464..588639 (-) 1176 WP_309530044.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  RFN65_RS02975 (RFN65_02975) yvyE 588639..589292 (-) 654 WP_003227979.1 YigZ family protein -
  RFN65_RS02980 (RFN65_02980) degS 589509..590666 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  RFN65_RS02985 (RFN65_02985) degU 590749..591438 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RFN65_RS02990 (RFN65_02990) fakBA 591536..592381 (+) 846 WP_309530045.1 DegV family protein -
  RFN65_RS02995 (RFN65_02995) comFA 592487..593878 (+) 1392 WP_309530046.1 ATP-dependent helicase ComFA Machinery gene
  RFN65_RS03000 (RFN65_03000) comFB 593938..594234 (+) 297 WP_015483764.1 late competence protein ComFB -
  RFN65_RS03005 (RFN65_03005) comFC 594198..594920 (+) 723 WP_157799620.1 comF operon protein ComFC Machinery gene
  RFN65_RS03010 (RFN65_03010) yvyF 594994..595413 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  RFN65_RS03015 (RFN65_03015) flgM 595494..595760 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  RFN65_RS03020 (RFN65_03020) flgN 595776..596258 (+) 483 WP_014481048.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=875805 RFN65_RS02985 WP_003219701.1 590749..591438(+) (degU) [Bacillus subtilis strain CP35]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=875805 RFN65_RS02985 WP_003219701.1 590749..591438(+) (degU) [Bacillus subtilis strain CP35]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATAGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1