Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   RFN60_RS19085 Genome accession   NZ_CP133653
Coordinates   3696590..3696709 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain CP38     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3691590..3701709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS19065 (RFN60_19065) albG 3691754..3692455 (+) 702 WP_029726080.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  RFN60_RS19070 (RFN60_19070) ywhL 3692461..3693837 (-) 1377 WP_015250987.1 YncE family protein -
  RFN60_RS19075 (RFN60_19075) ywhK 3693876..3695231 (-) 1356 WP_015250986.1 YncE family protein -
  RFN60_RS19080 (RFN60_19080) rapF 3695461..3696606 (+) 1146 WP_015250985.1 response regulator aspartate phosphatase RapF Regulator
  RFN60_RS19085 (RFN60_19085) phrF 3696590..3696709 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  RFN60_RS19090 (RFN60_19090) ywhH 3696807..3697269 (+) 463 Protein_3704 YbaK/EbsC family protein -
  RFN60_RS19095 (RFN60_19095) speB 3697301..3698173 (-) 873 WP_015250983.1 agmatinase -
  RFN60_RS19100 (RFN60_19100) speE 3698234..3699064 (-) 831 WP_003227543.1 spermidine synthase -
  RFN60_RS19105 (RFN60_19105) pbpG 3699266..3701341 (+) 2076 WP_048654792.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=875608 RFN60_RS19085 WP_009968329.1 3696590..3696709(+) (phrF) [Bacillus subtilis strain CP38]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=875608 RFN60_RS19085 WP_009968329.1 3696590..3696709(+) (phrF) [Bacillus subtilis strain CP38]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487