Detailed information NTG0875607

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: RFN60_RS19080
• Genome accession: NZ_CP133653
• Coordinates: 3695461..3696606 (+)
• Length: 381 a.a.
• NCBI ID: WP_015250985.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain CP38
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3690461..3701606

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RFN60_RS19060 (RFN60_19060)	albF	3690477..3691757 (+)	1281	WP_029726079.1	pitrilysin family protein	-
RFN60_RS19065 (RFN60_19065)	albG	3691754..3692455 (+)	702	WP_029726080.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
RFN60_RS19070 (RFN60_19070)	ywhL	3692461..3693837 (-)	1377	WP_015250987.1	YncE family protein	-
RFN60_RS19075 (RFN60_19075)	ywhK	3693876..3695231 (-)	1356	WP_015250986.1	YncE family protein	-
RFN60_RS19080 (RFN60_19080)	rapF	3695461..3696606 (+)	1146	WP_015250985.1	response regulator aspartate phosphatase RapF	Regulator
RFN60_RS19085 (RFN60_19085)	phrF	3696590..3696709 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
RFN60_RS19090 (RFN60_19090)	ywhH	3696807..3697269 (+)	463	Protein_3704	YbaK/EbsC family protein	-
RFN60_RS19095 (RFN60_19095)	speB	3697301..3698173 (-)	873	WP_015250983.1	agmatinase	-
RFN60_RS19100 (RFN60_19100)	speE	3698234..3699064 (-)	831	WP_003227543.1	spermidine synthase	-
RFN60_RS19105 (RFN60_19105)	pbpG	3699266..3701341 (+)	2076	WP_048654792.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45590.06 Da
• Isoelectric Point: 5.0624

>NTDB_id=875607 RFN60_RS19080 WP_015250985.1 3695461..3696606(+) (rapF) [Bacillus subtilis strain CP38]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=875607 RFN60_RS19080 WP_015250985.1 3695461..3696606(+) (rapF) [Bacillus subtilis strain CP38]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTTAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGGCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-207)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	99.213	100	0.992
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572