Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   V8N34_RS01720 Genome accession   NZ_CP149804
Coordinates   345364..347382 (+) Length   672 a.a.
NCBI ID   WP_318825376.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 340364..352382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS01720 (V8N34_01720) recG/mmsA 345364..347382 (+) 2019 WP_318825376.1 ATP-dependent DNA helicase RecG Machinery gene
  V8N34_RS01725 (V8N34_01725) - 347446..348405 (-) 960 WP_024381504.1 asparaginase -
  V8N34_RS01730 (V8N34_01730) - 348475..349840 (+) 1366 Protein_302 Cof-type HAD-IIB family hydrolase -
  V8N34_RS01735 (V8N34_01735) - 349856..350308 (-) 453 WP_004195772.1 universal stress protein -
  V8N34_RS01740 (V8N34_01740) - 350463..351677 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75691.22 Da        Isoelectric Point: 6.0966

>NTDB_id=875459 V8N34_RS01720 WP_318825376.1 345364..347382(+) (recG/mmsA) [Streptococcus suis strain YA]
MKRLCDELSVLPGIGPKSAEKFLKISIQNINDLLTYYPFRYEDFESKSIYDLQDGEKAVVVGEVVSPANVQYYGYKRNRL
RFSMKQGEFVLAVSFFNQPYLADKIVLGQDIAVWGKWDKAKASLTGMKILAQVSDELQPVYHVAQGISQVNLVKAIKTAI
DQGYLHLLEENLPSVLRERYRLMNRREAVFAMHFPTNLEEYRQALRRMKFEELFYFQLQLQMLKANNRDISNGLKIAYDA
DILAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDVGSGKTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFE
SLRQLFPELSIALLTGGMKAAERRTALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNP
DVLMMTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVGAQIYFISPLIEESEALDLK
NAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDAIMQAFKERKTNILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGHKQSYAVLVANPKTESGKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVANIIEDYPILEEAR
RVASQIVSVENWQEDPNWSILLANLKDREELD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=875459 V8N34_RS01720 WP_318825376.1 345364..347382(+) (recG/mmsA) [Streptococcus suis strain YA]
ATGAAAAGACTATGTGATGAATTATCGGTTTTGCCAGGGATTGGTCCAAAATCGGCTGAAAAATTCTTAAAAATTAGCAT
TCAGAATATTAATGATTTACTGACTTACTATCCATTTAGATATGAAGATTTTGAGAGTAAGTCTATTTATGATTTGCAGG
ATGGGGAGAAGGCAGTGGTAGTTGGGGAGGTGGTATCTCCAGCTAATGTACAGTATTATGGCTATAAAAGAAATAGACTC
CGTTTTTCAATGAAACAGGGTGAGTTTGTCTTAGCAGTTTCGTTTTTTAATCAGCCTTATTTAGCAGATAAGATTGTTTT
GGGGCAGGATATTGCAGTTTGGGGAAAGTGGGATAAGGCTAAGGCAAGTTTGACAGGAATGAAAATTTTGGCTCAAGTAT
CAGATGAGCTCCAACCTGTCTATCATGTGGCGCAAGGGATTTCGCAAGTAAATTTGGTTAAGGCTATTAAAACAGCTATT
GATCAGGGATATTTGCATTTATTAGAGGAGAACTTGCCATCAGTTTTACGAGAGCGCTATCGGTTAATGAATCGCCGAGA
GGCGGTTTTTGCGATGCATTTTCCTACAAATTTAGAAGAGTATAGACAAGCTTTGCGACGTATGAAGTTTGAGGAATTAT
TTTATTTTCAATTACAGTTGCAAATGCTGAAAGCCAACAATCGTGATATTTCGAATGGTTTGAAGATTGCCTATGATGCT
GATATATTGGCTATGCAAATAAGACAATTGCCGTTTGTCTTAACGGATGCTCAGTCTGGGGCTTTAGCTGAAATACTATC
AGATATGAAGTCCTATGGGCACATGAATCGTTTGTTACAAGGGGATGTTGGTTCAGGGAAGACAGTAGTTGCTGGATTGG
CTATGTTTGCTGCTGTGACTGCGGGGATGCAGGCTGCAATTATGGTGCCGACAGAAATTTTGGCTGAGCAACACTTTGAG
AGTTTGCGCCAGCTTTTTCCAGAACTTTCTATTGCTCTTTTGACAGGGGGAATGAAGGCTGCGGAGCGTCGTACTGCTTT
AGAGGCGATTTCTAGTGGTCAGGTAGACATCATTGTAGGAACTCACGCTCTTATCCAGGAAAGTGTGACGTACCATAAGC
TTGGTTTGGTTGTGACTGATGAGCAACATCGTTTTGGTGTTAAACAGCGCCGTCTGTTTCGTGAGAAGGGTGATAATCCG
GATGTGCTTATGATGACTGCTACACCTATTCCTCGGACGTTAGCCATTACAGCTTTTGGAGATATGGATGTATCGATTAT
TAATCAGTTACCTGCTGGTCGGAAGCCAATTATCACTCGCTGGGTCAAACATCAACAGCTGCCCACGGTCTTAGATTGGT
TGGAGCGGGAGTTAGAAGTGGGTGCTCAGATTTATTTTATCTCTCCGCTGATTGAAGAATCTGAGGCTCTAGATTTAAAG
AATGCTGTAGATCTGCAATCTGATTTACAGGCGCATTTTGGAGAGCAAGTTACAGTGGATTTGTTACACGGTAAGATGAA
GAATGACGAGAAAGATGCCATCATGCAGGCTTTTAAGGAGCGAAAAACGAATATTTTGGTTTCTACCACTGTTATTGAAG
TCGGAGTCAATGTGCCCAATGCAACGGTGATGGTTATTATGGATGCAGATCGTTTTGGTTTAAGCCAATTACATCAGTTG
AGAGGGCGTGTAGGACGTGGTCATAAGCAGTCTTATGCAGTGTTAGTTGCTAATCCTAAAACAGAGTCTGGTAAGGAACG
CATGAAAATTATGACAGAGACGACAGATGGTTTTATTTTGGCTGAAGCTGACTTAAAAATGCGTGGGTCTGGAGAAATAT
TTGGAACTCGTCAATCAGGTTTGCCAGAATTTCAAGTTGCAAATATTATCGAGGACTATCCAATTTTAGAGGAAGCAAGG
CGAGTTGCTAGTCAGATTGTTAGCGTGGAAAATTGGCAGGAGGACCCTAATTGGTCGATTTTGCTTGCTAATTTGAAAGA
TCGAGAGGAATTGGACTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(458-567)

RecG wedge domain (RecG_wedge)

(13-160)

DEAD/DEAH box helicase (DEAD)

(255-410)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

72.197

99.554

0.719
  recG/mmsA Streptococcus pneumoniae R36A

72.197

99.554

0.719
  recG Bacillus subtilis subsp. subtilis str. 168

48.939

98.214

0.481
  recG Neisseria meningitidis strain C311

40.458

97.47

0.394