Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   RFB14_RS13995 Genome accession   NZ_CP133587
Coordinates   2896620..2897336 (+) Length   238 a.a.
NCBI ID   WP_311067546.1    Uniprot ID   -
Organism   Brevibacillus borstelensis strain NEB264     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2891620..2902336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFB14_RS13965 (RFB14_13965) - 2891753..2892295 (-) 543 WP_003386939.1 hypothetical protein -
  RFB14_RS13970 (RFB14_13970) - 2892486..2893082 (-) 597 WP_024985058.1 VanW family protein -
  RFB14_RS13975 (RFB14_13975) - 2893309..2893935 (-) 627 WP_024985057.1 DsbA family protein -
  RFB14_RS13980 (RFB14_13980) - 2894041..2894772 (-) 732 WP_172920118.1 ABC transporter permease -
  RFB14_RS13985 (RFB14_13985) - 2894784..2895533 (-) 750 WP_003386943.1 ABC transporter permease -
  RFB14_RS13990 (RFB14_13990) - 2895533..2896444 (-) 912 WP_039071133.1 ABC transporter ATP-binding protein -
  RFB14_RS13995 (RFB14_13995) scnR 2896620..2897336 (+) 717 WP_311067546.1 response regulator transcription factor Regulator
  RFB14_RS14000 (RFB14_14000) - 2897333..2898724 (+) 1392 WP_039071134.1 sensor histidine kinase KdpD -
  RFB14_RS14005 (RFB14_14005) - 2898979..2899920 (-) 942 WP_311067547.1 aminoglycoside phosphotransferase family protein -
  RFB14_RS14010 (RFB14_14010) - 2900197..2900523 (+) 327 WP_024985204.1 helix-turn-helix domain-containing protein -
  RFB14_RS14015 (RFB14_14015) - 2900463..2901347 (+) 885 WP_311067548.1 IS3 family transposase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26788.89 Da        Isoelectric Point: 5.7181

>NTDB_id=875173 RFB14_RS13995 WP_311067546.1 2896620..2897336(+) (scnR) [Brevibacillus borstelensis strain NEB264]
MDQIKQKKVLIVDDEHEIREMIDSFLRKEGFFRIFHAASCSEAIEVCLSDKPDIAILDVMLPDGDGFSLFSSLRRISDIP
VLFLSARNKDEDRILGLGLGADDYIVKPFLPRELMLRLGAVLRRVYAPPKQERLPVFALGSFTVDLEGGVVRSASGEQPL
TAKEHALLKKLYENRGRIVTSDALCNAVWGDDSFGYENTLMVHIRRIREKIESDPSSPEHLLTVRGLGYKLMASEDRA

Nucleotide


Download         Length: 717 bp        

>NTDB_id=875173 RFB14_RS13995 WP_311067546.1 2896620..2897336(+) (scnR) [Brevibacillus borstelensis strain NEB264]
ATGGACCAGATCAAGCAAAAGAAAGTGCTCATCGTGGATGATGAGCATGAAATACGCGAGATGATCGACAGTTTTTTGCG
AAAGGAAGGCTTTTTTCGGATATTCCATGCGGCAAGCTGCAGCGAGGCGATCGAGGTCTGCCTGTCGGACAAGCCAGACA
TTGCCATTTTGGATGTCATGCTGCCGGATGGGGACGGCTTTTCCCTGTTTTCTTCCCTGCGCAGAATTTCAGACATACCT
GTGCTCTTTCTTTCGGCCAGAAACAAGGATGAAGACCGGATCCTCGGGCTTGGCCTCGGCGCCGACGATTACATTGTCAA
GCCGTTTTTGCCTCGCGAGCTTATGCTGCGCCTGGGAGCTGTATTGCGGCGCGTGTACGCTCCGCCAAAGCAGGAGCGGC
TGCCTGTTTTTGCGCTGGGGAGCTTTACTGTCGATTTGGAAGGGGGCGTGGTACGCAGCGCGAGCGGAGAACAGCCGTTG
ACCGCCAAGGAGCATGCCCTGCTGAAAAAGCTGTATGAAAACCGCGGGCGCATCGTCACAAGCGACGCTTTGTGCAACGC
GGTATGGGGTGACGACAGCTTTGGATACGAAAATACCCTCATGGTTCACATCCGGCGCATCCGGGAAAAAATCGAGTCGG
ATCCCTCCTCCCCTGAACACCTGCTGACTGTAAGAGGGCTGGGCTACAAGCTGATGGCAAGCGAGGATCGGGCATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(159-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50

96.639

0.483
  micA Streptococcus pneumoniae Cp1015

41.304

96.639

0.399
  vicR Streptococcus mutans UA159

39.485

97.899

0.387