Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RE735_RS11340 Genome accession   NZ_CP133585
Coordinates   2093135..2094385 (-) Length   416 a.a.
NCBI ID   WP_309175494.1    Uniprot ID   -
Organism   Bacillus aerius strain NEB1378     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2088135..2099385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE735_RS11320 (RE735_11320) spoVS 2088703..2088963 (-) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  RE735_RS11325 (RE735_11325) - 2089166..2089960 (-) 795 WP_019744184.1 TIGR00282 family metallophosphoesterase -
  RE735_RS11330 (RE735_11330) rny 2090050..2091612 (-) 1563 WP_003211958.1 ribonuclease Y -
  RE735_RS11335 (RE735_11335) recA 2091913..2092956 (-) 1044 WP_309173110.1 recombinase RecA Machinery gene
  RE735_RS11340 (RE735_11340) cinA 2093135..2094385 (-) 1251 WP_309175494.1 competence/damage-inducible protein A Machinery gene
  RE735_RS11345 (RE735_11345) pgsA 2094402..2094983 (-) 582 WP_309173111.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RE735_RS11350 (RE735_11350) - 2095056..2095967 (-) 912 WP_309173112.1 helix-turn-helix domain-containing protein -
  RE735_RS11355 (RE735_11355) - 2095991..2096782 (-) 792 WP_003211480.1 DUF3388 domain-containing protein -
  RE735_RS11365 (RE735_11365) - 2098356..2098613 (-) 258 WP_309173114.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45598.73 Da        Isoelectric Point: 4.8113

>NTDB_id=875116 RE735_RS11340 WP_309175494.1 2093135..2094385(-) (cinA) [Bacillus aerius strain NEB1378]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAAEGEVTLRLTAKHEDEKETERLL
KETEAQILEQVGEYFYGYGDTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSAHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=875116 RE735_RS11340 WP_309175494.1 2093135..2094385(-) (cinA) [Bacillus aerius strain NEB1378]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGACAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCGAATTTTATTATCTTCTCAGGGGGTCTTGGACCAACGAAAGACGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGTAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAGTACTT
CCGTAAAACCGGACGTGATATGTCGCCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGATCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTATATTCTGCTCCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTCGGCCTAAAGGAAAAAATCGTGTCTGTTGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAACTGGAAACAGATCTTGAAGATTTAATTGATGCACAGACCAATCCAACGATTG
CACCGCTTGCAGCTGAAGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTAGAACAGGTCGGCGAGTACTTCTATGGATATGGTGATACATCTCTTGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGAAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTAAACGGCAGTGTGGTTTGTTACACAAATCAAGTCAAGCAACAAGTGCTGGGC
TGCCGTGAAGAAACATTGTCTGCTCATGGTGCTGTCAGCAAAGAGTGTGCGTTAGAGCTCGCGGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGACAGCCAGTTGGAAAAGTAT
TTATCGGGCTATCGACAAAAGATCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGTCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.217

99.76

0.74
  cinA Streptococcus pneumoniae TIGR4

47.608

100

0.478
  cinA Streptococcus mitis SK321

47.608

100

0.478
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus pneumoniae Rx1

47.368

100

0.476
  cinA Streptococcus pneumoniae R6

47.368

100

0.476
  cinA Streptococcus pneumoniae D39

47.129

100

0.474
  cinA Streptococcus mutans UA159

48.157

97.837

0.471
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394