Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RE735_RS11760 Genome accession   NZ_CP133585
Coordinates   2183199..2183978 (-) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus aerius strain NEB1378     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2178199..2188978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE735_RS11730 (RE735_11730) fliH 2178312..2179076 (-) 765 WP_309173164.1 flagellar assembly protein FliH -
  RE735_RS11735 (RE735_11735) fliG 2179069..2180085 (-) 1017 WP_309173165.1 flagellar motor switch protein FliG -
  RE735_RS11740 (RE735_11740) fliF 2180097..2181689 (-) 1593 WP_309173166.1 flagellar basal-body MS-ring/collar protein FliF -
  RE735_RS11745 (RE735_11745) fliE 2181740..2182057 (-) 318 WP_309173167.1 flagellar hook-basal body complex protein FliE -
  RE735_RS11750 (RE735_11750) flgC 2182069..2182521 (-) 453 WP_309173168.1 flagellar basal body rod protein FlgC -
  RE735_RS11755 (RE735_11755) flgB 2182521..2182910 (-) 390 WP_309173170.1 flagellar basal body rod protein FlgB -
  RE735_RS11760 (RE735_11760) codY 2183199..2183978 (-) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RE735_RS11765 (RE735_11765) hslU 2184013..2185413 (-) 1401 WP_309173171.1 HslU--HslV peptidase ATPase subunit -
  RE735_RS11770 (RE735_11770) hslV 2185430..2185975 (-) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  RE735_RS11775 (RE735_11775) xerC 2185990..2186907 (-) 918 WP_309173172.1 tyrosine recombinase XerC -
  RE735_RS11780 (RE735_11780) trmFO 2186970..2188274 (-) 1305 WP_309173173.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=875117 RE735_RS11760 WP_007499612.1 2183199..2183978(-) (codY) [Bacillus aerius strain NEB1378]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=875117 RE735_RS11760 WP_007499612.1 2183199..2183978(-) (codY) [Bacillus aerius strain NEB1378]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCAATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGGATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAGGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCGGGCGTTATCGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471