Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RE735_RS09900 Genome accession   NZ_CP133585
Coordinates   1826335..1826970 (-) Length   211 a.a.
NCBI ID   WP_309175489.1    Uniprot ID   -
Organism   Bacillus aerius strain NEB1378     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1821335..1831970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE735_RS09880 (RE735_09880) - 1821736..1822440 (+) 705 WP_309172896.1 DnaD domain-containing protein -
  RE735_RS09885 (RE735_09885) nth 1822458..1823120 (+) 663 WP_309172897.1 endonuclease III -
  RE735_RS09890 (RE735_09890) - 1823117..1823626 (+) 510 WP_309172898.1 YpoC family protein -
  RE735_RS09895 (RE735_09895) - 1823661..1826315 (-) 2655 WP_309172899.1 PBP1A family penicillin-binding protein -
  RE735_RS09900 (RE735_09900) recU 1826335..1826970 (-) 636 WP_309175489.1 Holliday junction resolvase RecU Machinery gene
  RE735_RS09905 (RE735_09905) - 1827017..1827973 (+) 957 WP_309172900.1 DUF2515 domain-containing protein -
  RE735_RS09910 (RE735_09910) sspM 1828183..1828287 (-) 105 WP_309172901.1 acid-soluble spore protein SspM -
  RE735_RS09915 (RE735_09915) - 1828484..1828717 (+) 234 WP_231131595.1 DUF5446 family protein -
  RE735_RS09920 (RE735_09920) - 1828767..1829147 (+) 381 WP_309172902.1 YppE family protein -
  RE735_RS09925 (RE735_09925) - 1829256..1829687 (+) 432 WP_309172903.1 YppG family protein -
  RE735_RS09930 (RE735_09930) - 1829709..1830125 (-) 417 WP_309172904.1 Hsp20/alpha crystallin family protein -
  RE735_RS09935 (RE735_09935) - 1830293..1830799 (+) 507 WP_309172905.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24353.72 Da        Isoelectric Point: 9.6305

>NTDB_id=875113 RE735_RS09900 WP_309175489.1 1826335..1826970(-) (recU) [Bacillus aerius strain NEB1378]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
LNGRKSISKDELMEVGYLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=875113 RE735_RS09900 WP_309175489.1 1826335..1826970(-) (recU) [Bacillus aerius strain NEB1378]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTGGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAATGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTTCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGATCTCTTCTTCTTTTGGGAGCGGCAGCAG
CTAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGTGGGTTACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.267

95.735

0.701