Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RE735_RS03135 Genome accession   NZ_CP133585
Coordinates   615620..616309 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus aerius strain NEB1378     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 610620..621309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE735_RS03115 (RE735_03115) - 611304..612371 (+) 1068 WP_007499956.1 glycosyltransferase family 4 protein -
  RE735_RS03120 (RE735_03120) - 612409..613506 (-) 1098 WP_309174539.1 LCP family protein -
  RE735_RS03125 (RE735_03125) - 613491..614159 (-) 669 WP_309174540.1 YigZ family protein -
  RE735_RS03130 (RE735_03130) degS 614381..615556 (+) 1176 WP_309174541.1 sensor histidine kinase Regulator
  RE735_RS03135 (RE735_03135) degU 615620..616309 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  RE735_RS03140 (RE735_03140) - 616522..617364 (+) 843 WP_309174542.1 DegV family protein -
  RE735_RS03145 (RE735_03145) comFA 617484..618863 (+) 1380 WP_309174543.1 DEAD/DEAH box helicase Machinery gene
  RE735_RS03150 (RE735_03150) - 618912..619178 (+) 267 WP_309174544.1 late competence development ComFB family protein -
  RE735_RS03155 (RE735_03155) - 619139..619861 (+) 723 WP_309174545.1 ComF family protein -
  RE735_RS03160 (RE735_03160) - 619918..620337 (+) 420 WP_309174546.1 TIGR03826 family flagellar region protein -
  RE735_RS03165 (RE735_03165) flgM 620417..620680 (+) 264 WP_309174547.1 flagellar biosynthesis anti-sigma factor FlgM -
  RE735_RS03170 (RE735_03170) - 620699..621181 (+) 483 WP_309174548.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=875091 RE735_RS03135 WP_008348273.1 615620..616309(+) (degU) [Bacillus aerius strain NEB1378]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=875091 RE735_RS03135 WP_008348273.1 615620..616309(+) (degU) [Bacillus aerius strain NEB1378]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACGCTCATTGAAGCAGTGAAAGTGGTAGCTGACGGAGGTTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACTAGCGGCGTTTCGGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGTAAGAGCAACAGAGGTATTGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAATATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996