Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RDV79_RS14165 Genome accession   NZ_CP133573
Coordinates   3106727..3108241 (+) Length   504 a.a.
NCBI ID   WP_042050035.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain 202108B1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3101727..3113241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV79_RS14150 (RDV79_14150) - 3103491..3104435 (-) 945 WP_254196773.1 branched-chain amino acid transaminase -
  RDV79_RS14155 (RDV79_14155) ilvM 3104448..3104699 (-) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  RDV79_RS14160 (RDV79_14160) ilvG 3104696..3106342 (-) 1647 WP_254196774.1 acetolactate synthase 2 catalytic subunit -
  RDV79_RS14165 (RDV79_14165) comM 3106727..3108241 (+) 1515 WP_042050035.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RDV79_RS14170 (RDV79_14170) - 3108357..3109271 (+) 915 WP_017787026.1 acyltransferase -
  RDV79_RS14175 (RDV79_14175) - 3109265..3110218 (+) 954 WP_201881125.1 acyltransferase -
  RDV79_RS14180 (RDV79_14180) - 3110164..3110649 (-) 486 WP_201881127.1 DUF523 domain-containing protein -
  RDV79_RS14185 (RDV79_14185) - 3110750..3111400 (-) 651 WP_005306829.1 NrtR DNA-binding winged helix domain-containing protein -
  RDV79_RS14190 (RDV79_14190) - 3111476..3112111 (+) 636 WP_024942648.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54646.52 Da        Isoelectric Point: 7.1343

>NTDB_id=875016 RDV79_RS14165 WP_042050035.1 3106727..3108241(+) (comM) [Aeromonas dhakensis strain 202108B1]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPQENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTEALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGHAAI
EREHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=875016 RDV79_RS14165 WP_042050035.1 3106727..3108241(+) (comM) [Aeromonas dhakensis strain 202108B1]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGAATAGCGGCCCCGCAAGTCACGGTGGAAGTGCACCTCTCCAA
CGGTCTGCCCGCCTTCAATATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAGCACATCACGGTTAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATCCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGCGAATTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGCGTGCTGCCCGCCGTGCTCGCCTGCCGGGACGCGGGAC
GCACCCTGCTGGTACCGCAGGAGAACGGCCCCGAGGCCTCGCTGATCCAGGACGCCGAGGTACGCACCGCCCATCAGTTG
CTGGCCGTCACCGCCTGGCTGGCGGGTCAATACGAGCTGCCGCTGCCGGATCCTCAGACCACGGAGGCCCTGCCCGATGT
GCCGGACCTGCAGGACGTGATCGGCCAATCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCACCCGGCACCGGCAAGAGCATGCTGGCGAGCCGCTTGCCCGGCATACTGCCACCGCTCAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATTGGCGGCCTCACCCCCCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCGCACCACAGCGCCTCGGCGGTGGCGCTGGTGGGGGGTGGCAGCCACCCGCGGCCCGGCGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAAACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTCGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCTTGCGGCCACTACGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACTTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCCGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGAGCGGGTGCTGGGCGCGCGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAATTT
GCTTGATAGTCGTGAAATCGAAGAAATTTGCCGATTATCGCCGCAGGATGCCGAGTTTCTGGAGAACGCCATTCAGAAGC
TTGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGGCACGCCGCCATC
GAAAGAGAGCACCTGATCGAGGCGCTCGGCTATCGGGCCATGGATCGGCTGCTGTCACGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.546

99.603

0.633
  comM Vibrio campbellii strain DS40M4

62.55

99.603

0.623
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Glaesserella parasuis strain SC1401

60.552

100

0.609
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466