Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RDV64_RS12910 Genome accession   NZ_CP133480
Coordinates   2791637..2792164 (-) Length   175 a.a.
NCBI ID   WP_309195332.1    Uniprot ID   -
Organism   Acuticoccus sp. MNP-M23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2786637..2797164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV64_RS12890 (RDV64_12890) - 2786928..2787191 (+) 264 WP_309195328.1 hypothetical protein -
  RDV64_RS12895 (RDV64_12895) gyrA 2787306..2790083 (-) 2778 WP_309195329.1 DNA gyrase subunit A -
  RDV64_RS12900 (RDV64_12900) - 2790181..2790669 (-) 489 WP_309195330.1 YceI family protein -
  RDV64_RS12905 (RDV64_12905) - 2790796..2791746 (-) 951 WP_309195331.1 protein phosphatase 2C domain-containing protein -
  RDV64_RS12910 (RDV64_12910) ssb 2791637..2792164 (-) 528 WP_309195332.1 single-stranded DNA-binding protein Machinery gene
  RDV64_RS12915 (RDV64_12915) - 2792277..2792858 (-) 582 WP_309195333.1 flavodoxin family protein -
  RDV64_RS12920 (RDV64_12920) - 2793004..2794152 (-) 1149 WP_309195334.1 hypothetical protein -
  RDV64_RS12925 (RDV64_12925) uvrA 2794244..2797144 (+) 2901 WP_309195335.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18497.26 Da        Isoelectric Point: 5.3397

>NTDB_id=874740 RDV64_RS12910 WP_309195332.1 2791637..2792164(-) (ssb) [Acuticoccus sp. MNP-M23]
MAGSVNKVILIGNLGADPEIRRTQDGRPIANLRIATTESWRDRTSGDKREKTEWHRVVVFSEGLCRVIEQYVKKGSKVYI
EGALQTREWEDQQGQKRFTTEVVLQNFGGVLQMLDSRPGGGGGGDYDRGTSGGAGGSSNYGGGGGGYGGGDRGGSGGGGG
RPAPADEPYDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=874740 RDV64_RS12910 WP_309195332.1 2791637..2792164(-) (ssb) [Acuticoccus sp. MNP-M23]
ATGGCCGGCAGCGTCAACAAAGTCATCTTGATCGGCAATCTGGGAGCCGATCCGGAAATCCGCCGCACGCAGGACGGCCG
CCCCATCGCCAACCTGCGCATCGCGACCACAGAGAGCTGGCGCGACCGCACGTCCGGCGACAAGCGCGAGAAAACCGAGT
GGCACCGCGTGGTCGTCTTCTCGGAAGGCCTCTGCCGCGTGATCGAGCAATACGTCAAAAAGGGCTCGAAGGTTTACATC
GAAGGCGCGCTGCAAACCCGCGAGTGGGAAGACCAGCAGGGCCAGAAGCGCTTCACCACCGAGGTGGTGCTGCAGAATTT
CGGCGGCGTCCTGCAAATGCTGGACAGCAGGCCCGGCGGTGGCGGCGGCGGTGATTATGACCGTGGCACCAGCGGCGGCG
CCGGCGGCTCAAGCAATTATGGCGGCGGCGGTGGCGGCTATGGCGGCGGCGACCGCGGCGGTTCCGGCGGCGGCGGTGGG
CGCCCTGCCCCGGCCGATGAACCCTACGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.774

100

0.497
  ssb Vibrio cholerae strain A1552

42.487

100

0.469
  ssb Neisseria gonorrhoeae MS11

35.754

100

0.366