Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RDV59_RS10050 Genome accession   NZ_CP133476
Coordinates   2146252..2146770 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain LMG 11489     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2141252..2151770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS10030 (RDV59_10030) - 2143166..2144110 (+) 945 WP_037611177.1 magnesium transporter CorA family protein -
  RDV59_RS10035 (RDV59_10035) - 2144180..2144851 (+) 672 WP_002884401.1 DUF1129 domain-containing protein -
  RDV59_RS10040 (RDV59_10040) - 2144968..2145849 (+) 882 WP_038676767.1 DUF4300 family protein -
  RDV59_RS10045 (RDV59_10045) rpsR 2145971..2146210 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  RDV59_RS10050 (RDV59_10050) ssb 2146252..2146770 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  RDV59_RS10055 (RDV59_10055) rpsF 2146782..2147072 (-) 291 WP_038676771.1 30S ribosomal protein S6 -
  RDV59_RS10060 (RDV59_10060) - 2147277..2148230 (+) 954 WP_038676773.1 hypothetical protein -
  RDV59_RS10065 (RDV59_10065) mutY 2149398..2150549 (+) 1152 WP_038676775.1 A/G-specific adenine glycosylase -
  RDV59_RS10070 (RDV59_10070) - 2150847..2151107 (-) 261 WP_002884687.1 hypothetical protein -
  RDV59_RS10075 (RDV59_10075) - 2151128..2151529 (-) 402 WP_038676777.1 DUF6608 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=874693 RDV59_RS10050 WP_002891844.1 2146252..2146770(-) (ssb) [Streptococcus salivarius strain LMG 11489]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=874693 RDV59_RS10050 WP_002891844.1 2146252..2146770(-) (ssb) [Streptococcus salivarius strain LMG 11489]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAATGTTGCAGTTGC
TACATTCAGTCTTGCAGTTAATCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTATACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAGCCTGCGCAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AACCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36