Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   RDV59_RS04305 Genome accession   NZ_CP133476
Coordinates   849696..850697 (+) Length   333 a.a.
NCBI ID   WP_002886078.1    Uniprot ID   A0AB37CMJ0
Organism   Streptococcus salivarius strain LMG 11489     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 844696..855697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS04285 (RDV59_04285) smpB 845814..846278 (+) 465 WP_002885905.1 SsrA-binding protein SmpB -
  RDV59_RS04290 (RDV59_04290) - 846425..847831 (+) 1407 WP_004182928.1 Cof-type HAD-IIB family hydrolase -
  RDV59_RS04295 (RDV59_04295) - 847833..848201 (+) 369 WP_002886108.1 S1 RNA-binding domain-containing protein -
  RDV59_RS04300 (RDV59_04300) - 848301..849383 (-) 1083 WP_002886210.1 Xaa-Pro peptidase family protein -
  RDV59_RS04305 (RDV59_04305) ccpA 849696..850697 (+) 1002 WP_002886078.1 catabolite control protein A Regulator
  RDV59_RS04310 (RDV59_04310) - 850757..851824 (+) 1068 WP_002886051.1 MmcQ/YjbR family DNA-binding protein -
  RDV59_RS04315 (RDV59_04315) - 851837..852952 (+) 1116 WP_004182927.1 glycerate kinase -
  RDV59_RS04320 (RDV59_04320) - 852992..853447 (-) 456 WP_002885945.1 YueI family protein -
  RDV59_RS04325 (RDV59_04325) eno 853654..854958 (+) 1305 WP_002886048.1 surface-displayed alpha-enolase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36660.58 Da        Isoelectric Point: 5.4827

>NTDB_id=874665 RDV59_RS04305 WP_002886078.1 849696..850697(+) (ccpA) [Streptococcus salivarius strain LMG 11489]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFA
TLARGIDDIATMYKYNIVLASSDENDDHEVTVINSLFAKQVDGIIFMGYHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKAAVEDSITQLAKNNEKVAFVSGPLIDDINGKLRLAGYKAGLEKNNLRYNEGLVFEAKYSYKDGFDLAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPITSYTRPNLSSINHPLYDLGAVSMRMLTKIMNKEELEEKDV
ILNHGITLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=874665 RDV59_RS04305 WP_002886078.1 849696..850697(+) (ccpA) [Streptococcus salivarius strain LMG 11489]
ATGAATACTGATGAAACAATTACTATATACGACGTTGCGCGTGAAGCAGGTGTTTCGATGGCGACTGTGTCTCGTGTGGT
AAATGGAAATAAAAATGTAAAAGAAAACACCCGAAAAAAAGTGCTTGAGGTCATTGATCGTTTGGATTACCGTCCAAATG
CGGTTGCGCGTGGCTTGGCGAGTAAGAAAACCACTACTGTAGGAGTTGTCATCCCAAATATTGCTAATAGTTATTTTGCT
ACTTTAGCAAGGGGGATTGATGATATTGCAACCATGTACAAGTATAATATTGTTCTTGCATCTAGTGATGAAAATGACGA
TCACGAAGTTACCGTGATTAACTCTCTATTTGCCAAACAAGTAGACGGTATCATCTTCATGGGTTACCACTTGACGGAAA
AAATTCGTGCAGAATTTTCCCGTACTCGTACGCCGATTGTCCTAGCAGGAACAGTGGACCTCGAACACCAATTACCGAGT
GTTAACATCGACTATAAAGCTGCCGTTGAGGATTCTATAACACAGCTTGCCAAGAATAATGAAAAGGTTGCCTTTGTATC
AGGGCCACTAATTGATGATATTAATGGCAAGCTCCGTCTAGCTGGTTATAAGGCTGGACTTGAAAAGAATAATTTGCGCT
ACAATGAAGGACTAGTCTTTGAAGCTAAATATAGCTATAAAGATGGCTTTGATCTAGCACAACGTGTCTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGAGAAGATGAATTGGCTGCAGGTCTCTTGAATGGCCTCTTTGCTGCAGGTAAATCAGTTCC
AGAAGACTTCGAAATCATCACAAGCAATGACTCACCAATTACAAGCTATACACGTCCAAACCTTTCTAGTATTAATCATC
CTCTCTATGATTTAGGGGCAGTTAGCATGCGTATGTTGACTAAAATCATGAATAAGGAAGAACTTGAAGAAAAAGATGTT
ATTCTTAATCACGGTATTACCTTACGTCAGTCAACAAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(182-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.778

100

0.778
  ccpA Streptococcus pneumoniae D39

75.676

100

0.757
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.891

99.399

0.556