Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   RDV58_RS09090 Genome accession   NZ_CP133475
Coordinates   1839283..1840317 (-) Length   344 a.a.
NCBI ID   WP_002267541.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1834283..1845317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS09050 - 1834969..1835175 (-) 207 Protein_1741 translation initiation factor IF-2 N-terminal domain-containing protein -
  RDV58_RS09055 (RDV58_09035) - 1835196..1835498 (-) 303 WP_002262601.1 YlxQ-related RNA-binding protein -
  RDV58_RS09060 (RDV58_09040) rnpM 1835491..1835787 (-) 297 WP_002263922.1 RNase P modulator RnpM -
  RDV58_RS09065 (RDV58_09045) nusA 1835805..1836998 (-) 1194 WP_002265156.1 transcription termination factor NusA -
  RDV58_RS09070 (RDV58_09050) rimP 1837034..1837525 (-) 492 WP_002280372.1 ribosome maturation factor RimP -
  RDV58_RS09080 (RDV58_09060) trmB 1837797..1838432 (-) 636 WP_002265651.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RDV58_RS09085 (RDV58_09065) ccrZ 1838442..1839224 (-) 783 WP_002273963.1 cell cycle regulator CcrZ -
  RDV58_RS09090 (RDV58_09070) pptB 1839283..1840317 (-) 1035 WP_002267541.1 ABC transporter permease Regulator
  RDV58_RS09095 (RDV58_09075) pptA 1840320..1841045 (-) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  RDV58_RS09100 (RDV58_09080) - 1841110..1841529 (+) 420 WP_002262609.1 HIT family protein -
  RDV58_RS09105 (RDV58_09085) - 1841526..1841819 (+) 294 WP_002268777.1 hypothetical protein -
  RDV58_RS09110 (RDV58_09090) brpA 1841989..1843209 (-) 1221 WP_002262611.1 biofilm formation/cell division transcriptional regulator BrpA -
  RDV58_RS09115 (RDV58_09095) tsaE 1843540..1843983 (-) 444 WP_002280371.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40598.06 Da        Isoelectric Point: 10.6270

>NTDB_id=874617 RDV58_RS09090 WP_002267541.1 1839283..1840317(-) (pptB) [Streptococcus mutans strain LMG 14558]
MKAIFTKRRFHFINQCSRYLRYVFNDHFVLVLIFLLGFLMVQYSQLLKHFPANHWPIMLVLVLVVLTLLFWGNIATYLEP
ADQQFLLVREKDIVALIQKAKRRALFFWGTWQTLLLLILAPLFLRLGLALFSFLFLLLFLLFLKGLIIEKKSRAFLKQKG
LNWDHALNQEKKRQQAILKFFSLFTNVKGISNSVKRRAYLDFGTKLLPKETHKAWTNLYLRAFLRSGDYLGLTFRLGFLS
LLSLLFIDNPLMSAGLALLFNYLLLFQLLALYKHYDYQYLTALFPISKAEKKANLKQLLRVILYFLTAVEFCFSFSWQKT
IILLLAMLCLNEVYLPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=874617 RDV58_RS09090 WP_002267541.1 1839283..1840317(-) (pptB) [Streptococcus mutans strain LMG 14558]
ATGAAGGCAATTTTTACAAAAAGACGATTCCATTTTATCAATCAATGCAGTCGATACCTTCGCTATGTTTTTAATGATCA
TTTTGTTTTAGTATTGATTTTTTTACTAGGTTTTCTTATGGTACAGTATAGCCAACTGTTAAAACATTTTCCGGCTAATC
ATTGGCCTATCATGCTTGTTTTAGTGTTAGTTGTCTTGACCTTACTATTTTGGGGAAATATAGCGACTTATTTGGAACCA
GCGGATCAGCAATTTCTTTTGGTCAGGGAAAAGGACATTGTTGCTTTAATCCAAAAAGCTAAAAGACGAGCTCTTTTCTT
TTGGGGAACTTGGCAGACACTCTTGCTTCTTATTTTGGCACCTCTTTTTTTACGTTTGGGACTGGCACTTTTTTCTTTTC
TTTTTTTGCTCCTTTTTTTGCTCTTTTTAAAAGGATTGATCATTGAAAAAAAAAGCAGAGCTTTTTTGAAGCAGAAAGGA
CTGAACTGGGATCATGCTCTTAATCAAGAGAAAAAACGGCAGCAGGCAATTTTAAAATTCTTTTCACTTTTTACCAATGT
TAAGGGAATTTCAAACAGCGTTAAGCGACGGGCTTATTTGGATTTTGGGACAAAATTATTGCCGAAGGAGACTCATAAAG
CGTGGACTAATCTTTATTTAAGAGCTTTTTTACGCAGTGGCGATTATTTAGGACTGACCTTTCGTTTAGGTTTTTTAAGT
CTTTTAAGTCTTCTTTTTATTGATAATCCTTTAATGTCAGCAGGTTTAGCGCTCCTTTTTAATTACCTCTTGCTTTTTCA
ATTGTTGGCTCTTTATAAACATTATGATTATCAATATTTAACAGCCCTTTTTCCCATTTCAAAAGCGGAGAAGAAGGCTA
ATTTGAAACAGTTATTGCGTGTTATTCTATATTTTCTAACAGCTGTTGAATTTTGTTTTAGCTTTTCATGGCAAAAGACA
ATTATTTTACTTTTGGCAATGCTTTGTCTCAATGAAGTTTATCTGCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(3-155)

Bacterial ABC transporter protein EcsB (EcsB)

(157-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

51.453

100

0.515
  pptB Streptococcus thermophilus LMD-9

50.872

100

0.509