Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RDV58_RS09095 Genome accession   NZ_CP133475
Coordinates   1840320..1841045 (-) Length   241 a.a.
NCBI ID   WP_002262608.1    Uniprot ID   A0AAX1K0Q1
Organism   Streptococcus mutans strain LMG 14558     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1835320..1846045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS09060 (RDV58_09040) rnpM 1835491..1835787 (-) 297 WP_002263922.1 RNase P modulator RnpM -
  RDV58_RS09065 (RDV58_09045) nusA 1835805..1836998 (-) 1194 WP_002265156.1 transcription termination factor NusA -
  RDV58_RS09070 (RDV58_09050) rimP 1837034..1837525 (-) 492 WP_002280372.1 ribosome maturation factor RimP -
  RDV58_RS09080 (RDV58_09060) trmB 1837797..1838432 (-) 636 WP_002265651.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RDV58_RS09085 (RDV58_09065) ccrZ 1838442..1839224 (-) 783 WP_002273963.1 cell cycle regulator CcrZ -
  RDV58_RS09090 (RDV58_09070) pptB 1839283..1840317 (-) 1035 WP_002267541.1 ABC transporter permease Regulator
  RDV58_RS09095 (RDV58_09075) pptA 1840320..1841045 (-) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  RDV58_RS09100 (RDV58_09080) - 1841110..1841529 (+) 420 WP_002262609.1 HIT family protein -
  RDV58_RS09105 (RDV58_09085) - 1841526..1841819 (+) 294 WP_002268777.1 hypothetical protein -
  RDV58_RS09110 (RDV58_09090) brpA 1841989..1843209 (-) 1221 WP_002262611.1 biofilm formation/cell division transcriptional regulator BrpA -
  RDV58_RS09115 (RDV58_09095) tsaE 1843540..1843983 (-) 444 WP_002280371.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RDV58_RS09120 (RDV58_09100) - 1844111..1845541 (-) 1431 WP_002265163.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26686.26 Da        Isoelectric Point: 4.9888

>NTDB_id=874618 RDV58_RS09095 WP_002262608.1 1840320..1841045(-) (pptA) [Streptococcus mutans strain LMG 14558]
MLKIENLTGGYVNIPVLKNISFEVADGELVGLIGLNGAGKSTTINEIIGLLQPYEGKISIDGLTLADQEMAYRKKIGFIP
ETPSLYEELTLKEHLEMIAMAYDIKVEAALARAQKLLELFRLEDKLDWFPIHFSKGMKQKVMIICAFIIDPSLFIVDEPF
LGLDPVAISDLTQLLAAEKAKGKSILMSTHVLDSAEKMCDRFVILHHGQIRAQGSLADLRMTFGNAQASLNDIYMTLTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=874618 RDV58_RS09095 WP_002262608.1 1840320..1841045(-) (pptA) [Streptococcus mutans strain LMG 14558]
ATGTTAAAAATAGAAAATTTGACCGGTGGTTACGTCAACATTCCTGTCTTGAAAAATATCAGTTTTGAGGTTGCTGATGG
TGAGTTGGTCGGGCTCATAGGCCTCAATGGTGCAGGAAAATCAACAACTATCAATGAAATTATTGGACTTTTGCAGCCTT
ATGAAGGCAAAATCAGTATTGATGGACTGACGCTTGCAGATCAAGAAATGGCTTATCGAAAGAAAATTGGGTTTATTCCA
GAAACGCCTAGCCTTTACGAAGAATTAACCTTAAAAGAGCACTTGGAGATGATAGCCATGGCTTATGATATTAAAGTGGA
AGCAGCTTTGGCGCGTGCGCAAAAACTGCTGGAACTTTTTAGATTAGAAGATAAACTGGATTGGTTTCCTATTCATTTTT
CCAAAGGAATGAAACAAAAGGTCATGATTATCTGTGCCTTTATCATTGATCCGAGTCTTTTTATTGTTGATGAGCCTTTC
TTGGGATTGGATCCTGTTGCCATTTCAGATTTGACTCAGCTTTTGGCAGCAGAAAAGGCTAAGGGAAAATCCATTTTGAT
GTCAACTCATGTTTTGGATTCTGCTGAAAAGATGTGTGATCGCTTTGTTATTTTACATCATGGACAAATCCGAGCTCAAG
GAAGTCTCGCTGATTTACGAATGACTTTTGGAAATGCACAAGCCAGCCTTAACGATATCTATATGACTTTGACTAAAGAG
GGTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

76.987

99.17

0.763
  pptA Streptococcus salivarius strain HSISS4

76.569

99.17

0.759