Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnK   Type   Regulator
Locus tag   RDV58_RS05820 Genome accession   NZ_CP133475
Coordinates   1150568..1151875 (+) Length   435 a.a.
NCBI ID   WP_002280149.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1145568..1156875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS05790 (RDV58_05785) - 1145606..1145839 (+) 234 WP_002262193.1 DUF1858 domain-containing protein -
  RDV58_RS05795 (RDV58_05790) - 1145839..1147203 (+) 1365 WP_002280145.1 DUF438 domain-containing protein -
  RDV58_RS05800 (RDV58_05795) - 1147330..1148058 (-) 729 WP_002280146.1 ABC transporter permease -
  RDV58_RS05805 (RDV58_05800) - 1148055..1148795 (-) 741 WP_002280147.1 ABC transporter permease -
  RDV58_RS05810 (RDV58_05805) - 1148795..1149703 (-) 909 WP_002280148.1 ABC transporter ATP-binding protein -
  RDV58_RS05815 (RDV58_05810) scnR 1149878..1150567 (+) 690 WP_002266795.1 response regulator transcription factor Regulator
  RDV58_RS05820 (RDV58_05815) scnK 1150568..1151875 (+) 1308 WP_002280149.1 sensor histidine kinase KdpD Regulator
  RDV58_RS05825 (RDV58_05820) truB 1151968..1152849 (+) 882 WP_002280150.1 tRNA pseudouridine(55) synthase TruB -
  RDV58_RS05830 (RDV58_05825) - 1152880..1153800 (+) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  RDV58_RS05835 (RDV58_05830) spx 1153861..1154274 (+) 414 WP_002263835.1 transcriptional regulator Spx -
  RDV58_RS05840 (RDV58_05835) - 1154267..1154545 (+) 279 WP_002265496.1 UPF0223 family protein -
  RDV58_RS05845 (RDV58_05840) - 1154535..1155293 (+) 759 WP_002262204.1 inositol monophosphatase family protein -
  RDV58_RS05850 (RDV58_05845) - 1155357..1156661 (+) 1305 WP_002280151.1 RsmF rRNA methyltransferase first C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 435 a.a.        Molecular weight: 50089.11 Da        Isoelectric Point: 9.6900

>NTDB_id=874598 RDV58_RS05820 WP_002280149.1 1150568..1151875(+) (scnK) [Streptococcus mutans strain LMG 14558]
MDTVKFFTKLLTKYVLLVFALIVGVIFVYGLVFLTYLNYYGKEKPELVYTKIAQSSQQDAFNISKRSQKEMDKQKTWAMV
LNQDGQIVQSYRLPQQLKRHYTNADMVKFSRWYLDDYPVFSYVRGQQILVFGYPKKYSLAKFNFYLNTQFIKNFLHLGFV
FLGIIFLFIFVLFSRSKLRIKKEIEPIVSALTFLSQGQSAALNEKGNLSEIKTALNETSHILEESNMMKEQWIRGVSHDL
RNPLMLISGYTSQLEQQYGHGKQMEQIENQIQNMKEMISNLNLSYLLDNQKRHSKFSSLDLAVVLRSVIADILNNYETVI
LHFDLPAEAVLVKGDATLLERAFRNLLLNSIRHSGSNQIDLTYQLFDNKVIIIIADKGTITAQKIVELNQKSTNYESHGM
GTVITKQIIKLHQGETVFSDNHPGLKVTIVLPCNG

Nucleotide


Download         Length: 1308 bp        

>NTDB_id=874598 RDV58_RS05820 WP_002280149.1 1150568..1151875(+) (scnK) [Streptococcus mutans strain LMG 14558]
ATGGATACCGTTAAATTTTTTACGAAGTTATTGACCAAGTATGTTCTATTAGTATTTGCCTTAATTGTAGGAGTTATTTT
TGTTTATGGCTTGGTTTTCTTAACCTATCTTAATTATTATGGAAAGGAAAAACCAGAGCTAGTTTACACCAAAATCGCTC
AATCGAGTCAACAAGATGCGTTCAATATTAGTAAAAGAAGTCAAAAAGAAATGGATAAACAAAAGACTTGGGCTATGGTA
TTAAATCAAGATGGTCAGATCGTCCAATCTTATCGTTTACCTCAACAGCTCAAAAGACATTATACCAATGCTGATATGGT
GAAATTTTCGCGCTGGTATTTAGATGATTATCCTGTTTTTTCCTATGTACGTGGTCAGCAGATTTTAGTTTTTGGCTATC
CCAAAAAGTATTCCCTAGCAAAGTTTAATTTTTATCTGAATACGCAATTTATTAAGAATTTTCTTCATTTAGGGTTTGTT
TTCTTAGGCATCATCTTTTTATTTATCTTTGTTCTTTTTAGCCGTTCAAAGCTGCGCATTAAAAAGGAAATAGAGCCGAT
TGTCTCTGCGCTCACTTTCCTGTCGCAAGGTCAAAGTGCTGCTCTTAATGAAAAAGGCAATCTTTCTGAAATTAAGACAG
CTCTCAATGAAACTTCTCATATTTTAGAAGAAAGTAATATGATGAAAGAACAGTGGATTAGAGGAGTCAGTCACGATTTG
CGCAACCCGCTGATGCTGATTTCAGGCTACACCAGTCAATTGGAACAACAATATGGTCATGGAAAGCAAATGGAGCAGAT
TGAAAATCAGATTCAAAATATGAAAGAAATGATTTCTAATCTCAATTTGAGCTACCTGTTGGATAATCAAAAGCGTCATT
CCAAATTTTCAAGCCTTGATTTAGCTGTTGTTCTGCGATCCGTAATTGCTGATATTCTAAATAATTATGAAACAGTTATA
CTTCATTTTGATTTACCTGCAGAGGCGGTATTGGTAAAGGGTGATGCCACTTTATTAGAAAGGGCTTTTAGAAATCTTCT
GCTCAATAGTATTAGGCATAGTGGCTCTAATCAGATCGATTTGACTTATCAATTATTTGATAATAAAGTGATTATTATCA
TTGCAGATAAAGGAACTATTACAGCTCAGAAAATTGTAGAACTAAATCAAAAATCAACTAATTATGAGTCGCATGGCATG
GGCACCGTTATCACTAAGCAAATCATAAAACTTCATCAAGGTGAGACTGTCTTTTCAGATAATCATCCAGGTTTGAAAGT
GACGATTGTTTTGCCCTGTAACGGATGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(334-432)

His Kinase A (phospho-acceptor) domain (HisKA)

(228-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

98.614

99.54

0.982