Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   RDV58_RS05815 Genome accession   NZ_CP133475
Coordinates   1149878..1150567 (+) Length   229 a.a.
NCBI ID   WP_002266795.1    Uniprot ID   A0A829BLY4
Organism   Streptococcus mutans strain LMG 14558     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1144878..1155567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS05790 (RDV58_05785) - 1145606..1145839 (+) 234 WP_002262193.1 DUF1858 domain-containing protein -
  RDV58_RS05795 (RDV58_05790) - 1145839..1147203 (+) 1365 WP_002280145.1 DUF438 domain-containing protein -
  RDV58_RS05800 (RDV58_05795) - 1147330..1148058 (-) 729 WP_002280146.1 ABC transporter permease -
  RDV58_RS05805 (RDV58_05800) - 1148055..1148795 (-) 741 WP_002280147.1 ABC transporter permease -
  RDV58_RS05810 (RDV58_05805) - 1148795..1149703 (-) 909 WP_002280148.1 ABC transporter ATP-binding protein -
  RDV58_RS05815 (RDV58_05810) scnR 1149878..1150567 (+) 690 WP_002266795.1 response regulator transcription factor Regulator
  RDV58_RS05820 (RDV58_05815) scnK 1150568..1151875 (+) 1308 WP_002280149.1 sensor histidine kinase KdpD Regulator
  RDV58_RS05825 (RDV58_05820) truB 1151968..1152849 (+) 882 WP_002280150.1 tRNA pseudouridine(55) synthase TruB -
  RDV58_RS05830 (RDV58_05825) - 1152880..1153800 (+) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  RDV58_RS05835 (RDV58_05830) spx 1153861..1154274 (+) 414 WP_002263835.1 transcriptional regulator Spx -
  RDV58_RS05840 (RDV58_05835) - 1154267..1154545 (+) 279 WP_002265496.1 UPF0223 family protein -
  RDV58_RS05845 (RDV58_05840) - 1154535..1155293 (+) 759 WP_002262204.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26291.64 Da        Isoelectric Point: 6.9650

>NTDB_id=874597 RDV58_RS05815 WP_002266795.1 1149878..1150567(+) (scnR) [Streptococcus mutans strain LMG 14558]
MNYKEKKILILDDNPEILEMVQESLNIAGFNNLTSVQSKKEALEQLGKRSFDLAILDIMLPDGSGFEVLREIRKTSTMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQVNFSQALITKGELEIQLTAKEY
SILKVLYNNQNRIVTFDQLLEKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKLKVS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=874597 RDV58_RS05815 WP_002266795.1 1149878..1150567(+) (scnR) [Streptococcus mutans strain LMG 14558]
ATGAATTATAAAGAGAAAAAAATCTTAATTTTAGATGATAATCCAGAAATTTTAGAAATGGTGCAAGAGTCTTTAAACAT
TGCTGGTTTTAACAACCTAACAAGCGTGCAATCAAAAAAAGAGGCCTTGGAGCAACTTGGCAAAAGATCCTTTGATTTGG
CCATTTTAGACATTATGCTGCCTGATGGTTCGGGTTTTGAGGTACTAAGAGAAATTCGGAAAACTTCTACTATGCCAGTA
CTCTTTTTGTCTGCGGTATCCGACATTGAAAAGCAATACCAAGGTTTTGAGTTGGGAGCGGACGACTACATCGTCAAACC
TTTTCGTCCTAAGGAATTGGAGTTGCGAATCCTTTCTATTTTAAAAAGAGCCTATCCTGAAAAGGACGATACCCTTATTT
TACCTACTTGTCAGGTCAACTTTAGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAAGTTTTATATAACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGAAAAAGTTTGGGGTCTGCA
ATATCAAGGCTATGAAAATACTATGATGGCGCATATTCGCAAGATCAGGCAAAAGATTGAAGCCAATCCTTCTAAGCCAG
AATGTTTACTGACAGTTAAGGGCTTGGGTTACAAACTAAAGGTGAGTTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A829BLY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

99.127

100

0.991
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

36.207

100

0.367