Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RDV58_RS04195 Genome accession   NZ_CP133475
Coordinates   797289..798092 (+) Length   267 a.a.
NCBI ID   WP_002279972.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 792289..803092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS04170 (RDV58_04170) - 792574..793278 (-) 705 WP_002264823.1 amino acid ABC transporter permease -
  RDV58_RS04175 (RDV58_04175) - 793296..794108 (-) 813 WP_002262932.1 transporter substrate-binding domain-containing protein -
  RDV58_RS04180 (RDV58_04180) - 794105..794887 (-) 783 WP_002262931.1 amino acid ABC transporter ATP-binding protein -
  RDV58_RS04185 (RDV58_04185) vicR 795240..795947 (+) 708 WP_002262930.1 response regulator YycF Regulator
  RDV58_RS04190 (RDV58_04190) vicK 795940..797292 (+) 1353 WP_002264821.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RDV58_RS04195 (RDV58_04195) vicX 797289..798092 (+) 804 WP_002279972.1 MBL fold metallo-hydrolase Regulator
  RDV58_RS04200 (RDV58_04200) rnc 798199..798894 (+) 696 WP_002266141.1 ribonuclease III -
  RDV58_RS04205 (RDV58_04205) smc 798894..802430 (+) 3537 WP_002279973.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29723.79 Da        Isoelectric Point: 6.1184

>NTDB_id=874594 RDV58_RS04195 WP_002279972.1 797289..798092(+) (vicX) [Streptococcus mutans strain LMG 14558]
MTETGFRYSILASGSSGNSFYLETPQKRILIDAGLSGKKISQLMAEIDRKVDDVDAILVTHEHKDHIHGVGVLARKYGLD
VYANAATWQAMDSMIGKIDVSQKHIFDLGKTITFGDIDIESFGVSHDAAQPQFYRLMKDGKSFVLLTDTGYVSDRMADLI
ENADGYLIESNHDIEILRSGIYPWSLKQRILSDKGHLSNDDGAETMVRTLGNKTKKIYLGHLSKENNVKELAHMTMKNAL
MQADLAVDHDFKIYDTSPDTALPLAKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=874594 RDV58_RS04195 WP_002279972.1 797289..798092(+) (vicX) [Streptococcus mutans strain LMG 14558]
ATGACAGAAACAGGTTTTAGATACAGCATTCTGGCTTCTGGTTCAAGTGGCAATAGTTTTTATTTGGAAACTCCTCAAAA
GAGAATTTTAATTGACGCAGGCCTCTCAGGTAAGAAAATTAGTCAATTAATGGCAGAAATAGACCGAAAAGTAGATGATG
TTGATGCCATTTTAGTAACACATGAACATAAAGATCATATTCACGGTGTTGGTGTACTAGCTCGGAAATATGGTTTGGAT
GTCTATGCGAATGCAGCAACATGGCAAGCTATGGATAGCATGATTGGTAAAATTGATGTCAGCCAAAAACATATCTTTGA
TCTGGGGAAAACCATCACTTTTGGGGATATTGATATTGAAAGTTTTGGTGTCAGCCATGATGCTGCTCAACCACAGTTTT
ACCGCCTGATGAAAGACGGCAAGAGTTTTGTCTTATTGACGGATACAGGTTATGTCAGTGATCGTATGGCAGATCTGATT
GAAAATGCTGATGGTTATCTGATTGAGTCCAATCATGATATTGAAATTTTACGCTCAGGTATCTACCCTTGGAGTTTAAA
ACAGCGTATTTTATCCGATAAAGGACACCTATCAAATGATGATGGTGCAGAAACAATGGTTCGAACTTTGGGGAATAAAA
CAAAAAAGATTTATTTGGGACATCTCAGCAAAGAAAACAATGTCAAAGAATTAGCCCATATGACGATGAAGAATGCTCTC
ATGCAGGCAGATTTGGCTGTAGATCATGATTTTAAGATTTATGATACCTCGCCAGATACTGCTTTACCATTAGCAAAAAT
CTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

99.251

100

0.993