Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   RDV58_RS03830 Genome accession   NZ_CP133475
Coordinates   723962..724963 (+) Length   333 a.a.
NCBI ID   WP_002266631.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 718962..729963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS03805 (RDV58_03805) - 718969..719486 (+) 518 Protein_698 hypothetical protein -
  RDV58_RS03810 (RDV58_03810) celB 719502..720860 (+) 1359 WP_002262793.1 PTS cellobiose transporter subunit IIC -
  RDV58_RS03815 (RDV58_03815) - 721126..721896 (+) 771 WP_002268260.1 carbonic anhydrase -
  RDV58_RS03820 (RDV58_03820) - 722023..722604 (+) 582 WP_002262795.1 CDP-archaeol synthase -
  RDV58_RS03825 (RDV58_03825) - 722720..723799 (-) 1080 WP_002280310.1 Xaa-Pro peptidase family protein -
  RDV58_RS03830 (RDV58_03830) ccpA 723962..724963 (+) 1002 WP_002266631.1 catabolite control protein A Regulator
  RDV58_RS03835 (RDV58_03835) - 725111..726571 (+) 1461 WP_002278506.1 alpha-amylase -
  RDV58_RS03840 (RDV58_03840) - 726681..727679 (+) 999 WP_002278505.1 glycosyltransferase -
  RDV58_RS03845 (RDV58_03845) - 727681..729015 (+) 1335 WP_002269198.1 glycosyltransferase family 4 protein -
  RDV58_RS03850 (RDV58_03850) - 729094..729285 (+) 192 WP_002266172.1 hypothetical protein -
  RDV58_RS03855 (RDV58_03855) - 729279..729920 (+) 642 WP_002268572.1 hypothetical protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36643.92 Da        Isoelectric Point: 6.8583

>NTDB_id=874589 RDV58_RS03830 WP_002266631.1 723962..724963(+) (ccpA) [Streptococcus mutans strain LMG 14558]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFS
ILAKGIDDIATMYKYNIVLASSDEDDDKEVNVINTLFAKQVDGIIFMGHHLTEKIRAEFSRARTPVVLSGTVDLEHQLPS
VNIDHSKAAQDAVALLAKHHDKIAFVSGPLIDDINGKVRLAGYKEGLKKKGLPFKEGLVFEAQYKYQEGYQLAQRVINSG
ATAAYVTEDELAAGLLNGLFAAGKKVPEDFEIITSNDSTIALYTRPNMTSISQPIYDLGAVAMRMLTKIMNKEELEEKEI
VLNHGIRERGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=874589 RDV58_RS03830 WP_002266631.1 723962..724963(+) (ccpA) [Streptococcus mutans strain LMG 14558]
ATGAACACAGATGACACAATCACTATTTATGATGTTGCCCGTGAAGCGGGAGTGTCCATGGCAACTGTCAGCCGTGTTGT
GAATGGAAATAAAAATGTTAAAGAGAATACCCGCAAAAAAGTCCTAGAAGTCATTGACCGTCTTGATTATCGGCCAAATG
CTGTGGCGCGTGGTTTGGCAAGTAAGAAAACGACTACGGTAGGTGTGGTTATCCCTAACATTGCTAATGCTTATTTTTCT
ATTTTAGCTAAGGGAATTGATGACATTGCAACCATGTATAAATATAATATTGTACTGGCTTCAAGTGATGAAGATGACGA
TAAGGAAGTCAATGTTATCAATACTTTATTTGCTAAACAGGTTGATGGTATTATTTTTATGGGACATCATTTAACTGAAA
AAATTCGCGCTGAATTTTCACGAGCACGGACACCGGTTGTTTTATCAGGTACTGTAGATCTGGAGCATCAACTCCCCAGT
GTTAATATTGATCATAGTAAGGCAGCACAAGATGCCGTAGCTTTATTGGCCAAACATCATGATAAGATTGCTTTTGTATC
GGGTCCCCTTATTGATGATATCAATGGCAAGGTACGTCTGGCTGGTTATAAAGAAGGCCTGAAAAAGAAAGGATTGCCTT
TCAAAGAAGGACTTGTTTTTGAAGCTCAATATAAGTATCAAGAAGGATATCAGTTAGCGCAGCGTGTCATTAATTCAGGC
GCAACAGCTGCTTATGTTACTGAGGATGAGTTGGCTGCTGGGCTGTTAAATGGTTTGTTTGCTGCTGGTAAGAAAGTCCC
AGAAGACTTTGAAATTATCACGAGTAATGATTCTACTATTGCGCTTTATACTCGTCCTAATATGACATCTATCAGTCAGC
CGATTTATGATTTAGGAGCAGTTGCTATGCGCATGTTAACAAAGATTATGAACAAGGAAGAATTGGAAGAAAAAGAAATT
GTTCTTAATCATGGTATCAGAGAAAGAGGAACAACTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.679

100

0.787

  ccpA Streptococcus pneumoniae D39

76.276

100

0.763

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.891

99.399

0.556