Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrR   Type   Regulator
Locus tag   RDV58_RS02585 Genome accession   NZ_CP133475
Coordinates   506604..506960 (-) Length   118 a.a.
NCBI ID   WP_002280415.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   activate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 501604..511960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS02550 (RDV58_02550) - 502895..503098 (-) 204 WP_002280327.1 hypothetical protein -
  RDV58_RS02555 (RDV58_02555) - 503403..503648 (+) 246 WP_002263367.1 hypothetical protein -
  RDV58_RS02560 (RDV58_02560) rpsF 503804..504094 (+) 291 WP_002261866.1 30S ribosomal protein S6 -
  RDV58_RS02565 (RDV58_02565) ssbA 504112..504606 (+) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  RDV58_RS02570 (RDV58_02570) rpsR 504636..504875 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  RDV58_RS02575 (RDV58_02575) - 505194..505913 (+) 720 WP_002280414.1 TraX family protein -
  RDV58_RS02580 (RDV58_02580) hdrM 505921..506607 (-) 687 WP_002268420.1 hdrR negative regulator HdrM Regulator
  RDV58_RS02585 (RDV58_02585) hdrR 506604..506960 (-) 357 WP_002280415.1 LytTR family transcriptional regulator HdrR Regulator
  RDV58_RS02590 (RDV58_02590) - 507099..507761 (-) 663 WP_002265267.1 DUF1129 domain-containing protein -
  RDV58_RS02595 (RDV58_02595) - 508043..508987 (-) 945 WP_002262667.1 magnesium transporter CorA family protein -
  RDV58_RS02600 (RDV58_02600) - 509387..509608 (-) 222 WP_018110215.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 14148.48 Da        Isoelectric Point: 10.3603

>NTDB_id=874584 RDV58_RS02585 WP_002280415.1 506604..506960(-) (hdrR) [Streptococcus mutans strain LMG 14558]
MEIHLNPKHQSVEVFLEKEIFFLNIRDILFIEINNRKTYVHTNDKIYKSHLLLRDFKEILPDYFQQIGKSQIANSLEISA
INKSFSSTPKISFRHSSKTTWVSRKYYKELLMKKRSLL

Nucleotide


Download         Length: 357 bp        

>NTDB_id=874584 RDV58_RS02585 WP_002280415.1 506604..506960(-) (hdrR) [Streptococcus mutans strain LMG 14558]
ATGGAGATTCACTTAAATCCTAAACATCAGTCAGTAGAGGTCTTTTTAGAAAAGGAAATTTTCTTTTTAAATATTAGAGA
TATTCTCTTTATTGAAATCAACAATCGGAAAACTTATGTTCATACTAATGATAAAATTTACAAAAGCCATTTGCTTCTGC
GCGATTTCAAAGAAATTTTACCTGATTATTTTCAGCAAATTGGCAAGAGTCAGATTGCCAATAGCCTTGAAATTTCTGCC
ATCAATAAGTCTTTCTCCTCTACCCCCAAAATTAGTTTTAGACATTCATCCAAAACAACTTGGGTATCTCGTAAATACTA
CAAAGAATTACTTATGAAAAAAAGGAGTTTACTATGA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(19-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrR Streptococcus mutans UA159

99.153

100

0.992