Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RDV58_RS02565 Genome accession   NZ_CP133475
Coordinates   504112..504606 (+) Length   164 a.a.
NCBI ID   WP_002261867.1    Uniprot ID   A0AAX1K2T1
Organism   Streptococcus mutans strain LMG 14558     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 499112..509606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS02540 (RDV58_02540) - 499472..500521 (+) 1050 WP_002280328.1 zinc-dependent alcohol dehydrogenase family protein -
  RDV58_RS02545 (RDV58_02545) mutY 500713..501858 (-) 1146 WP_002267522.1 A/G-specific adenine glycosylase -
  RDV58_RS02550 (RDV58_02550) - 502895..503098 (-) 204 WP_002280327.1 hypothetical protein -
  RDV58_RS02555 (RDV58_02555) - 503403..503648 (+) 246 WP_002263367.1 hypothetical protein -
  RDV58_RS02560 (RDV58_02560) rpsF 503804..504094 (+) 291 WP_002261866.1 30S ribosomal protein S6 -
  RDV58_RS02565 (RDV58_02565) ssbA 504112..504606 (+) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  RDV58_RS02570 (RDV58_02570) rpsR 504636..504875 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  RDV58_RS02575 (RDV58_02575) - 505194..505913 (+) 720 WP_002280414.1 TraX family protein -
  RDV58_RS02580 (RDV58_02580) hdrM 505921..506607 (-) 687 WP_002268420.1 hdrR negative regulator HdrM Regulator
  RDV58_RS02585 (RDV58_02585) hdrR 506604..506960 (-) 357 WP_002280415.1 LytTR family transcriptional regulator HdrR Regulator
  RDV58_RS02590 (RDV58_02590) - 507099..507761 (-) 663 WP_002265267.1 DUF1129 domain-containing protein -
  RDV58_RS02595 (RDV58_02595) - 508043..508987 (-) 945 WP_002262667.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.97 Da        Isoelectric Point: 4.7187

>NTDB_id=874582 RDV58_RS02565 WP_002261867.1 504112..504606(+) (ssbA) [Streptococcus mutans strain LMG 14558]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSNSYNAGGNNNFGGNNFSSQGSSQSQTPNFARDESPFGDSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=874582 RDV58_RS02565 WP_002261867.1 504112..504606(+) (ssbA) [Streptococcus mutans strain LMG 14558]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACTCGTGATGCTGAGCTCCGTTACACCCCAAGTAATCAAGCTGTGGC
AACTTTTACCCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTCATTAATATCGTGATTT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGGACTCTTTTAGGCATTACTGGTCGAATCCAGACCCGC
AATTATGAAAACCAACAAGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAAACAGTTATAATGCTGGTGGTAACAATAACTTTGGCGGAAATAATTTTTCTTCCCAAGGTT
CTTCACAATCTCAAACGCCAAACTTTGCTAGAGATGAAAGTCCATTTGGTGATTCAAATCCTATGGATATTTCAGACGAT
GATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.062

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.261

72.561

0.372
  ssb Glaesserella parasuis strain SC1401

32.62

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.632

69.512

0.366
  ssbB/cilA Streptococcus mitis NCTC 12261

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae Rx1

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae D39

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae R6

50.42

72.561

0.366
  ssbB/cilA Streptococcus mitis SK321

50.42

72.561

0.366