Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrM   Type   Regulator
Locus tag   RDV58_RS02580 Genome accession   NZ_CP133475
Coordinates   505921..506607 (-) Length   228 a.a.
NCBI ID   WP_002268420.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   repress competence development; negative regulate HdrR activity (predicted from homology)   
Competence regulation

Genomic Context

Location: 500921..511607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS02550 (RDV58_02550) - 502895..503098 (-) 204 WP_002280327.1 hypothetical protein -
  RDV58_RS02555 (RDV58_02555) - 503403..503648 (+) 246 WP_002263367.1 hypothetical protein -
  RDV58_RS02560 (RDV58_02560) rpsF 503804..504094 (+) 291 WP_002261866.1 30S ribosomal protein S6 -
  RDV58_RS02565 (RDV58_02565) ssbA 504112..504606 (+) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  RDV58_RS02570 (RDV58_02570) rpsR 504636..504875 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  RDV58_RS02575 (RDV58_02575) - 505194..505913 (+) 720 WP_002280414.1 TraX family protein -
  RDV58_RS02580 (RDV58_02580) hdrM 505921..506607 (-) 687 WP_002268420.1 hdrR negative regulator HdrM Regulator
  RDV58_RS02585 (RDV58_02585) hdrR 506604..506960 (-) 357 WP_002280415.1 LytTR family transcriptional regulator HdrR Regulator
  RDV58_RS02590 (RDV58_02590) - 507099..507761 (-) 663 WP_002265267.1 DUF1129 domain-containing protein -
  RDV58_RS02595 (RDV58_02595) - 508043..508987 (-) 945 WP_002262667.1 magnesium transporter CorA family protein -
  RDV58_RS02600 (RDV58_02600) - 509387..509608 (-) 222 WP_018110215.1 hypothetical protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26101.17 Da        Isoelectric Point: 6.7581

>NTDB_id=874583 RDV58_RS02580 WP_002268420.1 505921..506607(-) (hdrM) [Streptococcus mutans strain LMG 14558]
MKKNYFWYGLLGLLALYLITIAFIPGFHIFFSNMLMLALFFMLIALSNRSIFFFFLALGFLSIYLKDIFHFDYSTGPLFT
GIIIIGVILNSFLKPHYSYSYKGNHYFNMKQNANYIDNETDVFLKTLFSENTSYVTSQELNKIIIDTKFGEQSVDLSQAQ
FMTDSPEIHIDISFGETNLRIPNNWKIINKTHSPFASISFSGFPSTNGDFINVTLTGTVAMGSLNIQY

Nucleotide


Download         Length: 687 bp        

>NTDB_id=874583 RDV58_RS02580 WP_002268420.1 505921..506607(-) (hdrM) [Streptococcus mutans strain LMG 14558]
ATGAAAAAAAATTATTTTTGGTACGGTCTGCTTGGGCTTCTCGCACTTTACCTTATTACTATTGCTTTTATCCCGGGATT
TCATATTTTCTTTAGCAACATGTTGATGTTGGCCCTGTTCTTTATGTTAATAGCTTTGAGTAACAGGAGTATCTTCTTTT
TCTTTCTAGCCTTAGGTTTTCTTAGTATCTACTTGAAAGATATCTTTCATTTTGACTATTCTACCGGACCGCTTTTTACG
GGTATAATCATTATCGGCGTTATCTTAAATAGTTTCCTCAAACCACACTATTCTTATTCTTATAAAGGAAATCATTATTT
TAATATGAAACAAAATGCTAACTACATTGATAACGAAACAGATGTCTTTTTAAAAACACTTTTTTCTGAAAATACCAGTT
ATGTGACTTCTCAAGAATTAAATAAAATTATTATTGATACTAAGTTTGGAGAACAATCTGTTGATCTCTCTCAAGCTCAA
TTTATGACAGATTCTCCCGAAATTCATATAGATATTAGCTTTGGTGAAACCAATCTGCGTATTCCAAACAACTGGAAAAT
CATCAATAAAACTCACTCCCCCTTTGCTTCCATTTCATTTTCAGGTTTTCCTAGCACAAATGGTGATTTTATTAACGTTA
CATTGACTGGAACAGTGGCTATGGGATCTCTAAACATTCAATATTAA

Domains

Predicted by InterproScan.

Cell wall-active antibiotics response 4TMS YvqF (LiaF-like_C)

(128-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrM Streptococcus mutans UA159

99.123

100

0.991