Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RDV54_RS08405 Genome accession   NZ_CP133471
Coordinates   1754637..1756601 (+) Length   654 a.a.
NCBI ID   WP_000748905.1    Uniprot ID   A0AAX2LHI0
Organism   Streptococcus mitis strain LMG 14557     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1749637..1761601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS08380 (RDV54_08380) - 1750325..1751716 (+) 1392 WP_078228369.1 Cof-type HAD-IIB family hydrolase -
  RDV54_RS08385 (RDV54_08385) - 1751932..1752384 (-) 453 WP_000079148.1 universal stress protein -
  RDV54_RS08390 (RDV54_08390) - 1752546..1752848 (+) 303 WP_000977176.1 hypothetical protein -
  RDV54_RS08395 (RDV54_08395) - 1753005..1754219 (+) 1215 WP_000666474.1 pyridoxal phosphate-dependent aminotransferase -
  RDV54_RS08400 (RDV54_08400) rpmH 1754364..1754498 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  RDV54_RS08405 (RDV54_08405) amiA 1754637..1756601 (+) 1965 WP_000748905.1 peptide ABC transporter substrate-binding protein Regulator
  RDV54_RS08410 (RDV54_08410) - 1756890..1758734 (-) 1845 WP_000494451.1 APC family permease -
  RDV54_RS08415 (RDV54_08415) - 1758891..1759664 (+) 774 WP_033684736.1 TatD family hydrolase -
  RDV54_RS08420 (RDV54_08420) rnmV 1759664..1760230 (+) 567 WP_000659993.1 ribonuclease M5 -
  RDV54_RS08425 (RDV54_08425) rsmA 1760295..1761167 (+) 873 WP_001216850.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 73036.15 Da        Isoelectric Point: 4.7426

>NTDB_id=874525 RDV54_RS08405 WP_000748905.1 1754637..1756601(+) (amiA) [Streptococcus mitis strain LMG 14557]
MKKSKVMLFGAMALTAGLALAACGSSQSSNADKTYSYIFVSNPDTLDYITSTRDSTSSITTNLVDGLLENDQYGNLIPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYADVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGKSSDFATVGV
KAVDDYTLQYTLNQPETYWNSKTTASILSPVNEAFLKSQGDDFGSVTPSSILSNGPYLFKSFTSKSLIELDKNPNYWDKD
NVKIEKVKLSFFDGSDQDSIARGFLDGNYTDGRIFPTSSVFAELKKGNEDKITYTPQNSVTFYYLFNVNRQSYKQTMKQS
DKEKTDSRAAMQNKDFRQAINFAFDRHAYAAQTNGEDGADRILRNTITPSNFVQVGDKNFGDIVNEKIVNYGKDWANINL
NDGKQAFLNPEKAKEKFAKAKESLQAQGVTFPIHLDMPVDQTAKLDVQQAGSFKQTVEETLGKENVVIDVIQLSPDEKDQ
ATYFADTAEQKDYDIDISGWGGDYSDPKTYLAILDPETGSQLKNMGLSEGKDKEVKNKIGLSDYKKLLDQADAEITDTQA
RYEKYAEAQAWLTDSALFLPVQSGGANPIFRKTVPFTGPFSFVGHKGNADNYKYVELQKEPVTAKQYQELYEKWLKEKAE
SNKKAQEDLANHIQ

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=874525 RDV54_RS08405 WP_000748905.1 1754637..1756601(+) (amiA) [Streptococcus mitis strain LMG 14557]
ATGAAGAAATCAAAAGTTATGCTTTTTGGAGCTATGGCTTTGACAGCAGGTCTAGCTCTAGCGGCATGCGGGTCATCTCA
ATCAAGCAATGCAGACAAGACATACTCTTATATCTTTGTCAGCAACCCTGATACCTTGGATTACATTACCTCTACACGAG
ACTCTACATCTAGTATCACAACCAACTTGGTTGATGGTTTGTTGGAAAATGACCAGTATGGCAATCTCATCCCCTCTATG
GCTGAGTCATGGACCGTGTCAAAAGATGGTTTGACTTACACTTATAAAATCCGTCAGGGAGCTAAATGGTACACTTCTGA
AGGAGAAGAGTATGCGGATGTGACGGCTCATGATTTTGTGACTGGTCTCAAGTATGCGGCTGATAAAAAAGCTGAGAACT
TGTACTTGGTTCAAGACTCTATCAAGGGACTAGCAGACTATGTTGAAGGGAAATCATCTGATTTTGCAACTGTTGGTGTT
AAGGCAGTGGATGATTACACGCTACAATACACTCTCAACCAACCTGAGACTTATTGGAACTCTAAAACAACAGCAAGTAT
CCTTAGTCCTGTAAATGAAGCCTTCTTGAAGTCTCAGGGAGATGACTTTGGAAGTGTGACACCATCAAGTATCTTGTCAA
ATGGTCCTTACTTATTTAAATCATTCACATCCAAATCTTTGATTGAACTTGACAAAAACCCTAATTACTGGGATAAGGAC
AATGTTAAAATCGAGAAAGTGAAACTCTCTTTCTTTGACGGTTCTGACCAAGACAGCATTGCTAGAGGTTTCTTGGATGG
TAACTATACAGATGGCCGTATCTTCCCAACAAGTTCAGTCTTTGCTGAACTCAAGAAGGGGAATGAGGACAAGATTACCT
ACACACCGCAAAACTCAGTTACTTTCTATTATCTTTTCAACGTGAATCGTCAAAGCTACAAGCAGACTATGAAACAGTCT
GATAAGGAAAAGACGGATTCACGCGCAGCTATGCAAAATAAAGATTTCCGTCAGGCTATCAACTTTGCCTTTGACCGTCA
TGCCTATGCAGCGCAGACAAATGGTGAAGATGGAGCAGACCGTATCTTGCGTAATACGATTACACCAAGTAACTTTGTTC
AAGTTGGTGATAAGAACTTCGGTGACATTGTCAATGAGAAAATTGTCAACTACGGTAAAGATTGGGCAAATATCAACCTA
AACGATGGTAAGCAAGCCTTCTTGAATCCTGAAAAGGCCAAAGAGAAGTTTGCCAAGGCCAAAGAAAGTCTGCAAGCTCA
AGGAGTAACCTTCCCAATTCATTTGGATATGCCAGTTGACCAGACTGCCAAATTAGATGTGCAACAGGCTGGCTCTTTCA
AACAAACAGTAGAAGAAACTCTTGGTAAGGAGAATGTAGTTATCGATGTTATCCAACTTTCTCCAGATGAAAAAGACCAG
GCAACCTACTTTGCAGATACAGCAGAACAAAAAGACTACGATATCGACATCTCAGGATGGGGTGGAGACTACTCAGATCC
TAAGACTTACCTAGCTATTCTTGATCCAGAGACAGGTTCTCAGTTGAAAAACATGGGCTTGTCTGAAGGAAAAGACAAGG
AAGTCAAGAACAAGATTGGTCTTTCTGACTACAAGAAACTCTTGGATCAGGCTGATGCGGAAATCACAGATACTCAAGCT
CGCTATGAAAAATATGCTGAAGCCCAAGCTTGGTTGACAGATAGTGCCCTCTTCCTACCAGTTCAAAGTGGTGGAGCTAA
CCCAATCTTCCGTAAGACTGTACCGTTTACAGGCCCATTCTCATTCGTTGGTCATAAGGGAAATGCTGACAACTACAAAT
ATGTTGAATTGCAAAAAGAGCCAGTCACTGCTAAACAGTATCAAGAACTCTATGAAAAATGGCTGAAAGAAAAAGCTGAG
TCAAATAAAAAAGCTCAGGAAGATTTAGCTAACCATATTCAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.623

100

0.56
  amiA3 Streptococcus thermophilus LMD-9

55.319

100

0.557
  amiA3 Streptococcus thermophilus LMG 18311

55.015

100

0.554