Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RDV54_RS05585 Genome accession   NZ_CP133471
Coordinates   1176345..1178303 (-) Length   652 a.a.
NCBI ID   WP_001093128.1    Uniprot ID   A0AAX2L3X3
Organism   Streptococcus mitis strain LMG 14557     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1171345..1183303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS05565 (RDV54_05565) - 1172556..1173260 (-) 705 WP_001142527.1 tyrosine-protein kinase -
  RDV54_RS05570 (RDV54_05570) - 1173271..1173963 (-) 693 WP_000662188.1 CspC family polysaccharide chain length determinant protein -
  RDV54_RS05575 (RDV54_05575) cps4B 1173972..1174703 (-) 732 WP_000565386.1 capsular polysaccharide biosynthesis protein Cps4B -
  RDV54_RS05580 (RDV54_05580) - 1174710..1176155 (-) 1446 WP_000091629.1 LCP family protein -
  RDV54_RS05585 (RDV54_05585) amiA3 1176345..1178303 (-) 1959 WP_001093128.1 peptide ABC transporter substrate-binding protein Regulator
  RDV54_RS05590 (RDV54_05590) - 1178499..1180106 (-) 1608 WP_001156785.1 glycoside hydrolase family 13 protein -
  RDV54_RS05595 (RDV54_05595) - 1180259..1181743 (+) 1485 WP_000743565.1 DUF1846 domain-containing protein -
  RDV54_RS05600 (RDV54_05600) - 1181838..1182320 (+) 483 WP_000032563.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72566.55 Da        Isoelectric Point: 4.8791

>NTDB_id=874489 RDV54_RS05585 WP_001093128.1 1176345..1178303(-) (amiA3) [Streptococcus mitis strain LMG 14557]
MNTKKRVLSAGLTFAAALLLAACGQSGSDTKTYSSTFSGNPTTFNYLLDYYADNTAIITNLVDGLLENDNHGNLVPSLAE
DWSVSSDGLTYTYKLRKDAKWFTADGEEYAPVKAQDFVTGIKYAVDNKSQAIDLIQNSIKGLNDYITGADSDFSKVGVKA
IDDQTVEYTLARPEPYWNSKTTNSILFPVNEEFLNSKGKDFGTLSPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDHDKV
SIEHVKLAYFDGSDQELTIRNFESGAYSIAGVYPNSSNFAKTKEKYKDNIVYSLQDKTSWYFNFNVNRKAYNHTSKTTDE
QKKSTETAVLNKNFRQAVNFALDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVVASKLVNYGTEWSDINLAD
AQDAYFNKEKAQAKFAEAKKELASQGVTFPIHLDVAVDQTSKNAVTGMNSVKQTLESVLGADNIVIDVQQLSTDDFNNVA
FLAPTPADRDYDLNFDGWVGDYQDPSTYLNPFNAEDGFYLKIFGLDAQEDKAKIASLGLDTYTKMLKDADSENKDVAKRY
EKYAEAQAWMIDNSLIMSAMSSGGTASVTKVTPFTRGYSLVGIKGDGNNYKYMKLQKDTVTTKQYEEAKTKWEQESKKAI
EKAQKEAENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=874489 RDV54_RS05585 WP_001093128.1 1176345..1178303(-) (amiA3) [Streptococcus mitis strain LMG 14557]
ATGAATACAAAAAAGCGTGTTCTTAGCGCAGGCCTGACCTTTGCGGCTGCTTTGCTTTTAGCTGCTTGCGGACAATCAGG
TTCAGATACAAAAACTTACTCATCAACCTTTAGTGGAAATCCAACTACATTTAACTACTTGTTAGACTACTACGCTGATA
ATACAGCTATCATTACTAACCTAGTTGATGGTTTGCTTGAAAATGACAACCACGGAAACCTAGTTCCATCTTTGGCAGAG
GACTGGTCTGTTTCAAGCGACGGTCTGACTTATACCTACAAATTAAGAAAAGATGCTAAATGGTTCACGGCTGACGGTGA
AGAGTACGCCCCAGTCAAGGCCCAGGATTTTGTGACAGGTATCAAGTACGCAGTGGATAATAAATCCCAGGCCATTGACT
TGATTCAAAACTCGATCAAGGGCTTGAATGATTATATTACAGGAGCGGATTCTGACTTTTCTAAGGTTGGAGTGAAAGCA
ATTGACGACCAGACTGTTGAGTATACTTTGGCGCGCCCAGAACCTTACTGGAACTCAAAAACAACCAATAGTATCCTTTT
CCCAGTGAATGAAGAATTTCTAAATTCAAAAGGCAAAGATTTTGGTACCTTATCTCCAGATAGTATTCTCTACAGCGGAC
CTTATTTGTTAAAAGATTTCACATCAAAATCATCGATCGAGTATGTGAAGAACCCACATTACTATGATCATGACAAAGTA
TCAATTGAACACGTAAAATTGGCTTACTTTGATGGTTCAGACCAAGAATTGACCATCCGTAACTTTGAAAGTGGAGCTTA
TTCTATCGCTGGGGTTTATCCAAATAGTTCTAACTTTGCTAAGACCAAGGAGAAATATAAGGATAATATCGTCTATAGCT
TGCAGGACAAGACTTCTTGGTATTTCAATTTCAACGTCAACCGTAAGGCTTACAACCATACGTCTAAAACGACAGATGAG
CAGAAGAAGTCAACTGAGACAGCTGTCTTGAACAAAAACTTCCGCCAAGCGGTGAACTTTGCCCTGGACCGCACAGCCTA
TTCTGCTCAGTCAAACGGGGAAGAAGCAGCTAGCAAGACTCTTCGTAACACCCTAGTGCCTCCTACATTTGTCCAAGTTG
GAGACAAGACCTTTGGAGAAGTAGTTGCTTCTAAATTGGTCAACTATGGCACAGAATGGTCAGATATTAACTTGGCAGAT
GCTCAGGATGCCTATTTCAACAAAGAAAAAGCCCAAGCAAAATTTGCGGAAGCTAAAAAAGAATTGGCAAGTCAAGGTGT
GACTTTCCCAATTCACTTGGATGTTGCAGTTGATCAGACTAGTAAAAATGCTGTGACAGGCATGAACTCAGTTAAGCAAA
CCCTTGAGTCGGTTTTAGGTGCTGATAACATTGTCATTGATGTTCAACAACTTTCAACGGATGATTTTAATAATGTAGCC
TTTTTAGCGCCAACACCAGCTGATCGTGACTATGATTTGAACTTTGATGGTTGGGTAGGTGACTACCAAGATCCGTCAAC
TTATCTTAATCCTTTCAATGCAGAGGATGGATTCTACCTCAAGATTTTTGGTCTAGATGCTCAAGAAGATAAAGCTAAGA
TTGCTAGCTTGGGACTTGATACTTACACCAAGATGCTCAAAGATGCAGATAGCGAAAATAAAGATGTAGCCAAACGCTAT
GAAAAATATGCTGAAGCACAGGCTTGGATGATTGACAATTCTCTGATTATGTCAGCAATGTCAAGTGGTGGTACAGCATC
TGTAACCAAAGTAACGCCATTTACAAGAGGCTATTCACTGGTCGGCATCAAGGGTGATGGCAATAACTACAAGTACATGA
AACTGCAAAAAGATACTGTGACAACCAAACAGTATGAAGAAGCTAAGACTAAATGGGAGCAAGAAAGTAAAAAAGCAATC
GAAAAAGCTCAAAAAGAAGCAGAAAATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

50.381

100

0.508
  amiA3 Streptococcus thermophilus LMG 18311

49.924

100

0.503
  amiA Streptococcus salivarius strain HSISS4

50

100

0.503