Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RDV54_RS05485 Genome accession   NZ_CP133471
Coordinates   1154464..1156443 (-) Length   659 a.a.
NCBI ID   WP_000857579.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1149464..1161443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS05465 (RDV54_05465) gpsB 1150549..1150878 (-) 330 WP_000146535.1 cell division regulator GpsB -
  RDV54_RS05470 (RDV54_05470) - 1150951..1151478 (-) 528 WP_004239174.1 DUF1273 domain-containing protein -
  RDV54_RS05475 (RDV54_05475) recU 1151545..1152141 (+) 597 WP_000248752.1 Holliday junction resolvase RecU -
  RDV54_RS05480 (RDV54_05480) pbp1a 1152138..1154321 (+) 2184 WP_001041321.1 penicillin-binding protein PBP1A -
  RDV54_RS05485 (RDV54_05485) amiA3 1154464..1156443 (-) 1980 WP_000857579.1 peptide ABC transporter substrate-binding protein Regulator
  RDV54_RS05490 (RDV54_05490) rfbD 1156742..1157605 (-) 864 WP_000600892.1 dTDP-4-dehydrorhamnose reductase -
  RDV54_RS05495 (RDV54_05495) rfbB 1157671..1158720 (-) 1050 WP_000141489.1 dTDP-glucose 4,6-dehydratase -
  RDV54_RS05500 (RDV54_05500) - 1158734..1159327 (-) 594 WP_000131475.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  RDV54_RS05505 (RDV54_05505) rfbA 1159328..1160197 (-) 870 WP_000676151.1 glucose-1-phosphate thymidylyltransferase RfbA -
  RDV54_RS05510 (RDV54_05510) - 1160276..1161340 (-) 1065 WP_000878660.1 sugar transferase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73016.60 Da        Isoelectric Point: 4.7769

>NTDB_id=874488 RDV54_RS05485 WP_000857579.1 1154464..1156443(-) (amiA3) [Streptococcus mitis strain LMG 14557]
MKTRKVLALAGVTLLAAGVLAACSGGSATKGEQTFAFTYETDPDNLNYLTTSKAATSNITSNVIDGLFENDRYGNLVPSM
AEDWSVSKDGLTYTYKIRQDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKSQALYLVQDSIKGLDAYAKGENKDFSQVGI
KALDDQTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSILYNGPYLLKSLVAKSSVEFAKNPNYWDK
DNVHVDKIKLSFWDGQDTSKPAENFKDGSLTAARLYPTNASFAELEKTMKDNIVYTQQDSTTYLVGTNIDRQSYKYTSKT
SDEQKTSTKKALLNKDFRQAIAFGLDRTAYASQVNGASGASKILRNLFVPPTFVQADGKNFGDMVKEKLVTYGDEWKDVN
LADAQDGLYNPEKAKAEFAKAKSALQAEGVQFPIHLDMPVDQTATTKVQRVQSFKQSVEETLGTDNVVIDIQQLQKDEVL
NITYFAETAAGEDWDISDNVGWSPDFADPSTYLDIIKPSVGENTKTYFGFDSGTDNAAAKKVGLNDYEKLVTEAGNETID
VAKRYDKYAAAQAWLTDSALIIPTTSLTGRPILSKMVPFTMPFAFSGNKGTSDPLLYKYLELQDKAVTADEYQKAQDKWM
KEKEEFNKKAQEELAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=874488 RDV54_RS05485 WP_000857579.1 1154464..1156443(-) (amiA3) [Streptococcus mitis strain LMG 14557]
ATGAAAACAAGGAAAGTATTGGCTCTTGCGGGAGTCACTTTATTAGCAGCTGGTGTCTTAGCGGCTTGTTCTGGTGGTTC
TGCTACTAAAGGTGAGCAGACTTTTGCATTTACCTACGAGACAGACCCAGATAATCTCAACTATTTGACAACCAGCAAGG
CAGCTACTTCAAACATTACTAGTAACGTCATTGATGGATTGTTTGAAAATGACCGTTATGGGAATCTTGTTCCCTCTATG
GCAGAGGACTGGTCAGTTTCTAAAGATGGTTTGACCTACACTTATAAGATTCGTCAGGATGCCAAGTGGTACACATCTGA
AGGGGAAGAATATGCTCCTGTCAAGGCTCAAGACTTTGTAACAGGTCTTAAATATGCAACAGATAAGAAATCACAAGCTC
TTTACTTGGTACAGGATTCAATCAAGGGGCTGGATGCTTATGCTAAGGGAGAAAATAAAGATTTTTCTCAAGTTGGAATT
AAAGCCCTTGACGATCAAACAGTCCAATACACTTTGAACAAACCTGAAAGTTTTTGGAATTCTAAAACAACAATGGGTGT
CTTGGCACCAGTTAATGAAGAGTTTTTGAACTCAAAAGGGGATGATTTTGCTAAAGCGACAGATCCAAGCAGTATCTTGT
ATAATGGTCCTTATTTGTTAAAATCTCTTGTGGCTAAATCTTCCGTTGAATTTGCAAAAAACCCTAACTACTGGGATAAA
GATAATGTTCATGTTGATAAGATAAAATTGTCATTCTGGGATGGTCAAGATACCAGCAAACCTGCGGAAAACTTTAAAGA
TGGTAGTCTTACAGCAGCCAGACTTTATCCTACAAATGCAAGTTTTGCAGAACTTGAAAAAACGATGAAGGACAATATTG
TCTATACCCAACAAGACTCTACGACTTATCTAGTTGGTACAAATATTGACCGCCAGTCCTATAAATATACTTCTAAGACT
AGTGACGAACAAAAGACTTCTACTAAAAAGGCTCTCTTAAACAAGGATTTCCGCCAAGCTATTGCTTTTGGTTTGGATCG
TACTGCCTATGCTTCACAAGTGAACGGTGCCAGTGGTGCAAGCAAAATTTTGCGTAATCTCTTTGTGCCACCAACATTTG
TTCAAGCTGATGGGAAAAACTTTGGCGATATGGTCAAAGAAAAATTGGTGACTTACGGGGATGAATGGAAGGATGTTAAT
CTGGCCGATGCCCAAGATGGATTATATAATCCTGAAAAAGCCAAGGCAGAATTTGCCAAAGCTAAGTCCGCTCTACAAGC
TGAGGGAGTACAATTCCCAATTCACCTAGATATGCCAGTTGACCAGACAGCAACTACAAAAGTTCAACGTGTACAGTCTT
TCAAACAATCGGTTGAAGAAACCTTGGGTACAGATAATGTCGTAATTGATATTCAACAACTACAAAAAGATGAAGTCTTG
AATATTACCTACTTTGCTGAAACAGCAGCTGGGGAAGATTGGGATATTTCAGATAATGTTGGTTGGTCTCCAGACTTTGC
GGATCCATCTACTTACCTCGATATTATCAAACCATCAGTTGGTGAAAACACTAAAACCTACTTTGGCTTTGATTCTGGTA
CAGATAATGCTGCAGCTAAGAAGGTTGGTCTGAACGACTATGAGAAATTGGTAACTGAAGCTGGAAATGAGACAATAGAT
GTAGCAAAACGTTATGATAAGTATGCTGCAGCCCAAGCTTGGTTGACAGATAGTGCCTTGATTATTCCAACAACATCACT
CACTGGTCGCCCAATCTTGTCTAAGATGGTACCATTTACGATGCCGTTTGCCTTCTCTGGTAACAAGGGGACAAGCGATC
CGCTCCTATACAAATACTTGGAACTTCAAGACAAGGCAGTCACAGCAGATGAATATCAAAAAGCTCAAGATAAATGGATG
AAAGAAAAAGAAGAATTCAATAAAAAAGCGCAAGAAGAACTTGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.394

100

0.595
  amiA Streptococcus salivarius strain HSISS4

59.242

100

0.593
  amiA3 Streptococcus thermophilus LMG 18311

58.788

100

0.589