Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RDV54_RS01990 Genome accession   NZ_CP133471
Coordinates   382587..384554 (+) Length   655 a.a.
NCBI ID   WP_000837410.1    Uniprot ID   A0A2N6P6K1
Organism   Streptococcus mitis strain LMG 14557     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 377587..389554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS01975 (RDV54_01975) - 377887..378705 (+) 819 WP_004239340.1 aminoglycoside 6-adenylyltransferase -
  RDV54_RS01980 (RDV54_01980) parC 378936..381407 (+) 2472 WP_004239342.1 DNA topoisomerase IV subunit A -
  RDV54_RS01985 (RDV54_01985) - 381542..382564 (+) 1023 WP_000218997.1 branched-chain amino acid aminotransferase -
  RDV54_RS01990 (RDV54_01990) amiA3 382587..384554 (+) 1968 WP_000837410.1 peptide ABC transporter substrate-binding protein Regulator
  RDV54_RS01995 (RDV54_01995) - 384652..384882 (+) 231 WP_000037113.1 DUF2969 domain-containing protein -
  RDV54_RS02010 (RDV54_02010) rpsA 385255..386457 (+) 1203 WP_001001630.1 30S ribosomal protein S1 -
  RDV54_RS02015 (RDV54_02015) - 386543..387040 (+) 498 WP_020901731.1 GAF domain-containing protein -
  RDV54_RS02020 (RDV54_02020) dnaX 387040..388695 (+) 1656 WP_000283807.1 DNA polymerase III subunit gamma/tau -
  RDV54_RS02025 (RDV54_02025) - 388723..388917 (+) 195 WP_001081602.1 DUF3272 domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72760.35 Da        Isoelectric Point: 5.0687

>NTDB_id=874467 RDV54_RS01990 WP_000837410.1 382587..384554(+) (amiA3) [Streptococcus mitis strain LMG 14557]
MKSKKWLLTAGVVLSTTALLVACGKADKEADAPTTFSYVYAVDPASLDYSIATRTSTTDVIGNVVDGLMENDQYGNVIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
VKALDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLKASGKDYGAVTPAGILYNGPYILKTLTSKSLIEYEKNPNYWDK
EKVKIEKVKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEQYGDKITYSPQDSSSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGDQWKDVE
LVDGKDSIYNPDKAKAAFEKAKKDLESKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLNIMDPKSGSAMKHLGITKGKDKDVVAKLGLDQYKKLLDDADSETTNLE
ERYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKDIVTTKEYEEALKKWQKEKL
ESNGKYQKELEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=874467 RDV54_RS01990 WP_000837410.1 382587..384554(+) (amiA3) [Streptococcus mitis strain LMG 14557]
ATGAAATCGAAAAAGTGGCTCTTAACAGCAGGAGTGGTCCTGAGCACAACAGCTCTTTTAGTAGCTTGTGGAAAAGCTGA
TAAAGAAGCAGATGCACCGACAACATTTTCATATGTCTATGCAGTAGATCCAGCATCTTTGGACTATAGTATAGCGACTC
GTACATCTACAACAGATGTCATCGGGAACGTGGTTGATGGTTTGATGGAAAATGACCAATACGGAAATGTTATTCCTTCC
TTGGCTGAAGATTGGTCTGTGTCAAAAGATGGTTTGACTTATACCTACAAACTTCGTAAAGGAGTTAAATGGTACACTTC
TGAAGGTGAAGAATATGCAGAAGTAACAGCCCATGACTTTGTGACAGGACTAAAACACGTAGCTGACGGTAAGTCAGACG
GTGTCTCTCTCATCCAAAATTCAATCAAGGGCTTGGATGCCTACATGACTGGTGAGACCAATGATTTCTCTACAGTTGGT
GTTAAGGCCTTGGACGATTATACAGTTGAATATACCCTAAACAAACCAGAAAGCTTCTGGAACTCTAAAGTCACCACAGC
AACGATGTTGCCTGTAAATGAAGAGTTTTTGAAGGCATCAGGTAAAGATTATGGAGCAGTTACTCCAGCAGGGATTCTTT
ACAATGGTCCTTATATCTTGAAGACCTTGACTTCTAAATCGTTGATCGAATACGAGAAAAACCCAAATTACTGGGATAAA
GAAAAGGTAAAAATTGAAAAGGTCAAATTGACTTACTACGATGGTTCTGATCAGGAATCGTTGATTCGTAGCTTCTCTTC
AGGTGCCTATACGACAGCCCGTCTCTTCCCAAGTAGCTCAAACTTTGCTTCAACTTTGGAACAATACGGAGATAAAATCA
CTTATAGCCCACAGGACTCAAGTAGTTATTACTTCACCTTTAACGTAAATCGTCAATCATATAATAAAACTGCGAAAACA
AGTGAAGAGCAAAAGACTTCTACTAAAGAAGCTATGCTTAATAAGGACTTCCGTCAGGCTATCAACTTTGCCTTCAACCG
CCATTCTTATGCTGCCCAGCTAAATGGTGAAGACGGTGCGGACAAGATTATTCGTAACAGCCTCGTTCCTGACAACTTTG
TACAAGCAGGTGGTAAAAACTTTGGTCAAATCGCTCAAGCAGAGTTGGTGAACTATGGTGACCAATGGAAAGATGTTGAG
CTAGTTGACGGTAAGGATTCTATCTACAATCCTGACAAGGCTAAAGCTGCTTTCGAAAAAGCTAAGAAAGACTTGGAATC
TAAAGGGGTAACATTCCCAATTCACTTGGATGTCCCAGTTGAACAAACAGATACCATCGCTGTTCAACAAAGCAACTCTT
TCAAACAGTCTATTGAATCAACTCTTGGTGCTGAAAATGTTGTTATCGACGTTCTTCAAATGACAGATAATGAAAAGGAA
ACAATCACTTCTCAAGCGCGTGTTCCTTCTCAAAAAGATTATGATTTGAACAGTACAGGATGGGCTCCAAGCTATCAAGA
CCCAGCATCTTACTTGAATATCATGGATCCTAAATCAGGTTCTGCTATGAAACACCTTGGTATTACTAAAGGGAAAGATA
AGGATGTTGTAGCTAAACTTGGTTTGGACCAATATAAGAAATTATTGGATGATGCAGATTCAGAAACTACAAATCTTGAA
GAACGCTATGAAAAATATGCCAAGGCTCAAGCTTGGTTGACAGATAGTTCATTATTGATGCCAACAGCCTCATCTGGTGG
TTCTCCAGTTGTAAGTAATGTCGTGCCATTCTCAAAACCATACTCACAAGTTGGTATTAAGGGTGACCCATATATCTTTA
AAGGAATGAAATTGCAAAAAGATATTGTTACAACAAAAGAATATGAAGAAGCACTGAAAAAATGGCAAAAAGAAAAATTG
GAATCAAATGGTAAGTACCAAAAAGAACTAGAAAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N6P6K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.576

100

0.53
  amiA Streptococcus salivarius strain HSISS4

52.128

100

0.524
  amiA3 Streptococcus thermophilus LMG 18311

51.97

100

0.524