Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RDV50_RS00660 Genome accession   NZ_CP133462
Coordinates   140310..141113 (-) Length   267 a.a.
NCBI ID   WP_004519923.1    Uniprot ID   A0AB36GAR3
Organism   Neisseria subflava strain LMG 5313     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 135310..146113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS00650 (RDV50_00650) - 137488..138786 (-) 1299 WP_049351236.1 adenylosuccinate synthase -
  RDV50_RS00655 (RDV50_00655) - 138830..139987 (-) 1158 WP_137040694.1 ATP phosphoribosyltransferase regulatory subunit -
  RDV50_RS00660 (RDV50_00660) comL 140310..141113 (-) 804 WP_004519923.1 outer membrane protein assembly factor BamD Machinery gene
  RDV50_RS00665 (RDV50_00665) rluD 141112..142236 (+) 1125 WP_137040693.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RDV50_RS00670 (RDV50_00670) pgeF 142319..143089 (+) 771 WP_137040692.1 peptidoglycan editing factor PgeF -
  RDV50_RS00675 (RDV50_00675) lptE 143210..143689 (+) 480 WP_137040691.1 LPS assembly lipoprotein LptE -
  RDV50_RS00680 (RDV50_00680) holA 143689..144690 (+) 1002 WP_137040690.1 DNA polymerase III subunit delta -
  RDV50_RS00685 (RDV50_00685) - 144837..145256 (+) 420 WP_137040689.1 hypothetical protein -
  RDV50_RS00690 (RDV50_00690) - 145348..145872 (+) 525 WP_137040688.1 RDD family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31038.02 Da        Isoelectric Point: 8.5345

>NTDB_id=874370 RDV50_RS00660 WP_004519923.1 140310..141113(-) (comL) [Neisseria subflava strain LMG 5313]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEMSVARYYMKRGAYVAAANRAQKIVSRYQNTRYVEEALAMMELAYKKLDKPQLAADTRRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=874370 RDV50_RS00660 WP_004519923.1 140310..141113(-) (comL) [Neisseria subflava strain LMG 5313]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTGAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAATTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAATCCCGTTTTCCAAACGGCCGCTATGCCCAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTACAAAGACGATGAACCGGAAAAAGCCTTGGCTGCCATTGCGCGCTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCGCTATACTTGAAAGGTTTGGTTCTGTTTAACGAAGACCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCCGACCGCGATCCGAAAGCCAACCGCGATGCTTATCAGGCGTTTGCCGAGTTGGTGCAACGTTATCCAAACAGC
AAATACGCTGCCGATGCAACCGAGCGTATGGCCAAGCTGGTGGACGCTTTGGGCGGTAACGAGATGTCTGTGGCGCGTTA
TTACATGAAACGCGGTGCTTATGTTGCAGCGGCCAACCGTGCGCAAAAAATCGTCAGCCGTTACCAAAATACCCGTTACG
TTGAAGAAGCTTTGGCGATGATGGAACTGGCGTACAAAAAACTGGACAAGCCGCAACTGGCTGCCGATACACGCCGCGTT
TTGGAAACTAACTTCCCACAAAGCCCGTTCTTGCAACACGAATGGCGATCTGACGATATGCCTTGGTGGCGTTACTGGCG
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

88.722

99.625

0.884
  comL Neisseria gonorrhoeae MS11

87.97

99.625

0.876