Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   Q7Q33_RS12850 Genome accession   NZ_CP133412
Coordinates   2399997..2400428 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis strain KK001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2394997..2405428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7Q33_RS12800 (Q7Q33_12800) sinI 2395191..2395364 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  Q7Q33_RS12805 (Q7Q33_12805) sinR 2395398..2395733 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  Q7Q33_RS12810 (Q7Q33_12810) tasA 2395826..2396611 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  Q7Q33_RS12815 (Q7Q33_12815) sipW 2396675..2397247 (-) 573 WP_003246088.1 signal peptidase I SipW -
  Q7Q33_RS12820 (Q7Q33_12820) tapA 2397231..2397992 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  Q7Q33_RS12825 (Q7Q33_12825) yqzG 2398264..2398590 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  Q7Q33_RS12830 (Q7Q33_12830) spoIITA 2398632..2398811 (-) 180 WP_003230176.1 YqzE family protein -
  Q7Q33_RS12835 (Q7Q33_12835) comGG 2398882..2399256 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  Q7Q33_RS12840 (Q7Q33_12840) comGF 2399257..2399640 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  Q7Q33_RS12845 (Q7Q33_12845) comGE 2399666..2400013 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  Q7Q33_RS12850 (Q7Q33_12850) comGD 2399997..2400428 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  Q7Q33_RS12855 (Q7Q33_12855) comGC 2400418..2400714 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  Q7Q33_RS12860 (Q7Q33_12860) comGB 2400728..2401765 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  Q7Q33_RS12865 (Q7Q33_12865) comGA 2401752..2402822 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  Q7Q33_RS12870 (Q7Q33_12870) corA 2403234..2404187 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=873875 Q7Q33_RS12850 WP_004398628.1 2399997..2400428(-) (comGD) [Bacillus subtilis strain KK001]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=873875 Q7Q33_RS12850 WP_004398628.1 2399997..2400428(-) (comGD) [Bacillus subtilis strain KK001]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1