Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   WDR05_RS08420 Genome accession   NZ_CP149444
Coordinates   1583748..1584197 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain HC-9     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578748..1589197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS08380 (WDR05_08375) ctaE 1578764..1579387 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  WDR05_RS08385 (WDR05_08380) ctaF 1579390..1579722 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  WDR05_RS08390 (WDR05_08385) ctaG 1579750..1580643 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  WDR05_RS08395 (WDR05_08390) ylbA 1580675..1581037 (-) 363 WP_003232238.1 YugN family protein -
  WDR05_RS08400 (WDR05_08395) ylbB 1581177..1581623 (+) 447 WP_029726520.1 CBS domain-containing protein -
  WDR05_RS08405 (WDR05_08400) ylbC 1581707..1582747 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  WDR05_RS08410 (WDR05_08405) ylbD 1582979..1583377 (+) 399 WP_003232233.1 YlbD family protein -
  WDR05_RS08415 (WDR05_08410) ylbE 1583393..1583632 (+) 240 WP_003232231.1 YlbE-like family protein -
  WDR05_RS08420 (WDR05_08415) ylbF 1583748..1584197 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  WDR05_RS08425 (WDR05_08420) ylbG 1584252..1584524 (+) 273 WP_024573211.1 YlbG family protein -
  WDR05_RS08430 (WDR05_08425) rsmD 1584847..1585401 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WDR05_RS08435 (WDR05_08430) coaD 1585406..1585891 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  WDR05_RS08440 (WDR05_08435) spoVV 1585902..1587128 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  WDR05_RS08445 (WDR05_08440) ylbK 1587309..1588091 (+) 783 WP_003232221.1 patatin family protein -
  WDR05_RS08450 (WDR05_08445) sepM 1588093..1589118 (+) 1026 WP_029726516.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=873872 WDR05_RS08420 WP_003221370.1 1583748..1584197(+) (ylbF) [Bacillus subtilis strain HC-9]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=873872 WDR05_RS08420 WP_003221370.1 1583748..1584197(+) (ylbF) [Bacillus subtilis strain HC-9]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1