Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   Q7Q33_RS12805 Genome accession   NZ_CP133412
Coordinates   2395398..2395733 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain KK001     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2390398..2400733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7Q33_RS12785 (Q7Q33_12785) gcvT 2390990..2392078 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  Q7Q33_RS12790 (Q7Q33_12790) hepAA 2392520..2394193 (+) 1674 WP_004398544.1 DEAD/DEAH box helicase -
  Q7Q33_RS12795 (Q7Q33_12795) yqhG 2394214..2395008 (+) 795 WP_003230200.1 YqhG family protein -
  Q7Q33_RS12800 (Q7Q33_12800) sinI 2395191..2395364 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  Q7Q33_RS12805 (Q7Q33_12805) sinR 2395398..2395733 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  Q7Q33_RS12810 (Q7Q33_12810) tasA 2395826..2396611 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  Q7Q33_RS12815 (Q7Q33_12815) sipW 2396675..2397247 (-) 573 WP_003246088.1 signal peptidase I SipW -
  Q7Q33_RS12820 (Q7Q33_12820) tapA 2397231..2397992 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  Q7Q33_RS12825 (Q7Q33_12825) yqzG 2398264..2398590 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  Q7Q33_RS12830 (Q7Q33_12830) spoIITA 2398632..2398811 (-) 180 WP_003230176.1 YqzE family protein -
  Q7Q33_RS12835 (Q7Q33_12835) comGG 2398882..2399256 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  Q7Q33_RS12840 (Q7Q33_12840) comGF 2399257..2399640 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  Q7Q33_RS12845 (Q7Q33_12845) comGE 2399666..2400013 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  Q7Q33_RS12850 (Q7Q33_12850) comGD 2399997..2400428 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  Q7Q33_RS12855 (Q7Q33_12855) comGC 2400418..2400714 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=873871 Q7Q33_RS12805 WP_003226345.1 2395398..2395733(+) (sinR) [Bacillus subtilis strain KK001]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=873871 Q7Q33_RS12805 WP_003226345.1 2395398..2395733(+) (sinR) [Bacillus subtilis strain KK001]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1