Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   LLI816_RS11370 Genome accession   NZ_CP149095
Coordinates   2242176..2244176 (-) Length   666 a.a.
NCBI ID   WP_031561236.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain I8-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2237176..2249176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLI816_RS11345 (LLI816_11340) - 2237261..2237989 (-) 729 WP_031296592.1 pseudouridine synthase -
  LLI816_RS11350 (LLI816_11345) - 2238085..2238720 (-) 636 WP_063283509.1 hypothetical protein -
  LLI816_RS11355 (LLI816_11350) - 2238892..2239839 (-) 948 WP_003130410.1 IS30 family transposase -
  LLI816_RS11360 (LLI816_11355) mnmE 2240012..2241379 (+) 1368 WP_003131240.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  LLI816_RS11365 (LLI816_11360) - 2241430..2242176 (-) 747 WP_010906409.1 hypothetical protein -
  LLI816_RS11370 (LLI816_11365) recG/mmsA 2242176..2244176 (-) 2001 WP_031561236.1 ATP-dependent DNA helicase RecG Machinery gene
  LLI816_RS11375 (LLI816_11370) - 2244314..2244658 (-) 345 WP_010906411.1 zinc ribbon domain-containing protein YjdM -
  LLI816_RS11380 (LLI816_11375) gap 2244729..2245739 (-) 1011 WP_003131244.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  LLI816_RS11385 (LLI816_11380) - 2246019..2246540 (-) 522 WP_003131246.1 DUF536 domain-containing protein -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74830.56 Da        Isoelectric Point: 5.8208

>NTDB_id=873810 LLI816_RS11370 WP_031561236.1 2242176..2244176(-) (recG/mmsA) [Lactococcus lactis subsp. lactis strain I8-16]
MKLTDSVQFLKGVGPKSVENFHKLGIFTVQDLLLYFPFRYEDFASRSVFELVDGEKATIIGTVVTPANVQYYGFKRNRLS
FKIKEGEAVVAVSFFNQPYLADKVEVGKEIAVYGKWEQAKQQLMGMKVVAQVDDGLEPVYHLAAGMKQSQLVKVIHQVFE
SDLLSELPENLPEFLIKKYRLMNRQEAVLAMHFPEDMEAHKQALRRVKFEELFMFQLKLQALKNKEKSGRAGLEVVFEQG
EIDQKISELPFELTGAQLSALSEILTDMKSPYHMNRLLQGDVGSGKTVVASLAMYAACLANFQAAIMVPTEILARQHFAN
LKALFPELQISLLVSGLKVAERREILADLVSGHTHMVVGTHALIQEGVDFYNLGLVITDEQHRFGVNQRKILREKGQNPD
VLMMTATPIPRTLAITAFGDMDVSIIDELPKGRQPITTRWVKHEQFSEVLSWIKAEVAKDSQVYFISPLIEESETLDLKN
AEALFAELNEYFGLFAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVIMDADRFGLSQLHQLR
GRVGRGTKKSYAILVANPKSDSGKQRMKIMTETQNGFILAEEDLKMRGSGEIFGLRQSGLPEFIAADLVNDYNILEVARK
EAVEIFKNADEFPDLIAQVNVDGGFD

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=873810 LLI816_RS11370 WP_031561236.1 2242176..2244176(-) (recG/mmsA) [Lactococcus lactis subsp. lactis strain I8-16]
ATGAAATTAACAGATTCAGTGCAATTTTTAAAAGGTGTGGGACCGAAATCTGTGGAAAATTTCCATAAGTTAGGAATTTT
CACGGTTCAAGATTTATTGCTTTATTTCCCTTTTCGTTATGAAGATTTCGCAAGTCGTTCGGTTTTTGAACTTGTTGACG
GAGAAAAAGCAACAATTATTGGAACGGTAGTGACACCAGCTAATGTCCAGTATTACGGATTTAAACGTAATCGACTTTCA
TTTAAAATTAAAGAAGGTGAGGCCGTGGTTGCTGTCAGCTTTTTTAATCAACCTTATTTGGCTGACAAAGTGGAAGTTGG
TAAGGAAATTGCAGTTTACGGAAAATGGGAGCAGGCAAAGCAACAACTGATGGGGATGAAGGTTGTGGCTCAGGTGGACG
ATGGCTTAGAACCTGTTTATCATTTGGCAGCGGGTATGAAACAAAGTCAATTGGTCAAAGTAATTCATCAGGTTTTTGAA
TCAGACCTTCTATCAGAATTACCTGAGAACTTACCAGAATTTTTGATTAAAAAATATCGTCTGATGAACCGGCAAGAAGC
CGTTTTGGCTATGCATTTTCCTGAAGATATGGAAGCTCATAAGCAGGCTTTACGTCGTGTAAAATTTGAAGAATTATTCA
TGTTTCAGTTGAAATTACAGGCCTTAAAAAATAAAGAAAAATCAGGCCGAGCAGGATTAGAAGTTGTTTTTGAGCAAGGA
GAAATTGATCAGAAGATTTCTGAATTACCTTTTGAACTGACAGGTGCTCAATTAAGCGCTTTGTCAGAGATTCTGACGGA
TATGAAATCTCCTTATCACATGAATCGACTTTTGCAAGGTGATGTGGGTTCTGGTAAAACAGTTGTTGCTTCCCTTGCCA
TGTACGCGGCTTGTTTGGCGAATTTTCAAGCAGCAATTATGGTACCAACGGAAATCCTTGCCCGTCAGCATTTTGCAAAC
TTGAAAGCTCTTTTTCCAGAATTGCAAATTTCACTTTTGGTTTCGGGTTTGAAAGTGGCAGAGCGCCGCGAGATTTTGGC
TGATTTAGTTAGTGGTCATACACATATGGTAGTTGGAACTCATGCGCTAATTCAAGAAGGGGTTGATTTTTATAATTTGG
GTTTGGTGATTACAGACGAACAACACCGTTTCGGAGTCAATCAACGAAAAATTTTACGAGAAAAAGGGCAAAATCCAGAT
GTTCTAATGATGACAGCTACACCCATTCCAAGAACGCTTGCGATTACGGCTTTTGGGGATATGGATGTTTCAATTATTGA
TGAACTACCCAAGGGACGTCAACCCATTACTACAAGGTGGGTCAAACATGAACAATTTTCCGAAGTTTTAAGTTGGATAA
AAGCAGAGGTTGCTAAAGATTCACAGGTTTATTTTATTTCACCTTTAATTGAGGAAAGTGAAACGTTGGACCTGAAAAAC
GCAGAAGCTCTTTTTGCGGAATTAAATGAATACTTTGGATTATTTGCCAAAATTGGTCTTTTACATGGAAAAATGAAAAA
TGATGAAAAAGACCAAATCATGCAAGAATTTAAGGCTAAAAAATTAGATATTTTGGTTTCAACAACAGTGATTGAAGTGG
GAGTTGACGTTCCTAATGCTACCATTATGGTGATTATGGATGCTGACCGCTTTGGACTTTCGCAGCTTCACCAATTGCGT
GGTCGTGTTGGTCGGGGAACAAAAAAATCTTATGCCATTTTAGTAGCAAATCCTAAGTCCGATTCAGGAAAACAACGGAT
GAAAATTATGACAGAAACACAAAATGGTTTTATTTTAGCCGAAGAAGATTTGAAAATGCGTGGTTCTGGAGAGATTTTTG
GACTTCGTCAGTCAGGACTTCCAGAATTTATTGCGGCTGATTTAGTCAATGATTATAATATTTTAGAAGTGGCTAGAAAA
GAAGCAGTTGAAATTTTTAAAAATGCAGATGAGTTTCCTGATTTGATTGCTCAAGTTAATGTTGACGGGGGCTTTGATTG
A

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(7-157)

Helicase conserved C-terminal domain (Helicase_C)

(456-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-651)

DEAD/DEAH box helicase (DEAD)

(257-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

66.202

96.847

0.641
  recG/mmsA Streptococcus pneumoniae R36A

66.202

96.847

0.641
  recG Bacillus subtilis subsp. subtilis str. 168

50.698

96.847

0.491
  recG Neisseria meningitidis strain C311

40.181

99.399

0.399