Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   WHX55_RS30325 Genome accession   NZ_CP148752
Coordinates   6617866..6619941 (+) Length   691 a.a.
NCBI ID   WP_150757460.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain AB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6612866..6624941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX55_RS30300 (WHX55_30270) - 6613443..6614300 (-) 858 WP_150757462.1 SDR family oxidoreductase -
  WHX55_RS30305 (WHX55_30275) exbB 6614489..6615460 (+) 972 WP_150724883.1 tonB-system energizer ExbB -
  WHX55_RS30310 (WHX55_30280) exbD 6615467..6615895 (+) 429 WP_007975187.1 TonB system transport protein ExbD -
  WHX55_RS30315 (WHX55_30285) - 6615892..6616641 (+) 750 WP_150757461.1 energy transducer TonB -
  WHX55_RS30320 (WHX55_30290) - 6616927..6617856 (+) 930 WP_008047093.1 hydrogen peroxide-inducible genes activator -
  WHX55_RS30325 (WHX55_30295) recG 6617866..6619941 (+) 2076 WP_150757460.1 ATP-dependent DNA helicase RecG Machinery gene
  WHX55_RS30330 (WHX55_30300) - 6620020..6621423 (+) 1404 WP_150757459.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  WHX55_RS30335 (WHX55_30305) - 6621507..6622808 (-) 1302 WP_353741770.1 hypothetical protein -
  WHX55_RS30340 (WHX55_30310) - 6622971..6623357 (-) 387 WP_150753838.1 helicase -
  WHX55_RS30345 (WHX55_30315) - 6623745..6624137 (+) 393 WP_353741771.1 DUF6124 family protein -
  WHX55_RS30350 (WHX55_30320) - 6624227..6624502 (-) 276 WP_003195589.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76124.75 Da        Isoelectric Point: 6.9133

>NTDB_id=873548 WHX55_RS30325 WP_150757460.1 6617866..6619941(+) (recG) [Pseudomonas fluorescens strain AB1]
MSELSQVSVTALKGVGEAMAEKLAKVGLENLQDVLFHLPLRYQDRTRVVPIGALRPGQDAVIEGTVSGADVVMGRRRSLV
VRLQDGTGGLSLRFYHFSNAQKEGLKRGTRIRCYGEARPGASGLEIYHPEYRAITGDEPPPVDETLTPVYPLTEGLTQQR
LRQLCMQTLTLLGPSSLPDWLPNELARDYQLAPLADAIRYLHNPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRLR
ESMRALRAPAMPKATQLPAKYLANLGFNPTGAQQRVGNEIAYDLSQHEPMLRLIQGDVGAGKTVVAALAALQALEAGYQV
ALMAPTEILAEQHFITFKRWLEPLGIEVAWLAGKLKGKNRVAALEQIASGTPMVVGTHALFQDEVQFKNLALVIIDEQHR
FGVQQRLALRQKGVGGRMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLITDTRRVEVIERVRSACAE
GRQAYWVCTLIEESEELTCQAAETTFEDLTAALGELKVGLIHGRMKPAEKAAVMAEFKAGNLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQALLERWPTHVSPLLDRWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=873548 WHX55_RS30325 WP_150757460.1 6617866..6619941(+) (recG) [Pseudomonas fluorescens strain AB1]
ATGAGCGAGTTGTCGCAAGTGTCGGTGACGGCACTCAAGGGTGTCGGTGAAGCCATGGCCGAGAAACTGGCCAAGGTCGG
CCTGGAAAACCTCCAGGACGTGTTGTTTCACCTGCCCCTGCGCTATCAGGACCGCACTCGCGTGGTGCCGATCGGCGCAC
TGCGGCCCGGGCAAGATGCGGTCATCGAAGGCACCGTCAGCGGTGCCGATGTGGTCATGGGCCGGCGGCGCAGCCTGGTG
GTCCGATTGCAGGATGGCACCGGGGGCTTGAGCCTGCGTTTCTATCACTTCAGCAACGCGCAAAAGGAAGGCCTCAAACG
CGGCACGCGGATTCGCTGCTACGGCGAGGCGCGACCCGGTGCTTCGGGGCTGGAGATCTACCACCCGGAATACCGCGCCA
TCACCGGCGACGAACCGCCGCCGGTGGATGAAACCCTGACCCCGGTCTACCCGCTGACCGAAGGCCTGACCCAACAGCGC
TTGCGCCAGTTGTGCATGCAGACCCTCACCCTGCTCGGCCCCAGCAGCCTGCCCGACTGGCTGCCGAACGAACTGGCCCG
CGACTACCAATTGGCGCCGCTGGCCGATGCGATTCGCTACCTGCACAACCCGCCCGCCGATGCCGACGTCGATGAACTGG
CCCTCGGTCACCACTGGGCGCAGCACCGTCTGGCTTTCGAAGAACTGCTGACCCATCAGCTGTCGCAACAACGCCTGCGC
GAAAGCATGCGCGCCCTGCGTGCGCCCGCGATGCCCAAAGCCACGCAACTGCCGGCCAAATACCTGGCCAACCTCGGCTT
CAACCCAACCGGTGCCCAGCAACGGGTCGGCAATGAAATCGCCTATGACCTCAGCCAGCACGAACCGATGCTGCGGCTGA
TCCAGGGTGACGTCGGCGCCGGCAAAACCGTGGTCGCCGCCCTTGCCGCGCTGCAAGCGCTGGAGGCCGGTTATCAGGTT
GCGCTGATGGCGCCCACCGAGATTCTCGCCGAGCAGCACTTCATTACCTTCAAGCGCTGGCTCGAACCGCTGGGCATCGA
AGTCGCATGGCTGGCCGGCAAGCTCAAGGGTAAGAACCGCGTAGCCGCGCTGGAGCAAATCGCCAGCGGCACGCCGATGG
TGGTCGGCACCCACGCGTTGTTCCAGGACGAAGTGCAATTCAAGAACCTGGCGCTGGTGATCATCGACGAACAGCACCGT
TTCGGCGTACAGCAGCGTCTGGCCTTGCGGCAGAAAGGCGTCGGCGGGCGCATGTGCCCGCACCAGTTGATCATGACCGC
CACGCCGATTCCGCGCACGCTGGCCATGAGCGCCTACGCCGATCTCGACACCTCGATCCTCGACGAATTGCCGCCCGGCC
GAACCCCGGTCAACACCGTGCTGATCACCGACACCCGGCGGGTCGAAGTCATCGAACGGGTGCGCAGCGCTTGCGCCGAG
GGGCGCCAGGCCTATTGGGTGTGCACGCTGATCGAAGAGTCGGAAGAGTTGACCTGCCAGGCCGCCGAAACCACCTTCGA
AGACCTCACCGCCGCCCTTGGCGAGTTGAAAGTCGGGCTGATCCACGGCCGTATGAAGCCTGCGGAAAAAGCTGCGGTGA
TGGCCGAGTTCAAGGCCGGCAACCTGCAACTGCTGGTCGCGACCACGGTGATCGAAGTCGGCGTGGACGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAGCGCCTGGGCCTGGCGCAATTGCACCAGTTGCGCGGCCGCGTCGGCCGGGGCAG
CGCCGTCAGCCATTGCGTGCTGCTCTACCATCCGCCGCTGTCGCAGATCGGCCGCCAGCGCCTGGGCATCATGCGCGAAA
CCAACGACGGTTTTGTCATCGCCGAAAAGGATCTGGAACTGCGTGGCCCCGGCGAAATGCTCGGCACCCGGCAGACAGGT
TTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGATGCCGATTTGCTGCCCGCCGTGCGGGATGCCGCCCAGGCATTGCT
CGAGCGCTGGCCGACCCACGTCAGCCCGCTACTCGACCGATGGCTGCGTCATGGCCAACAATACGGCCAAGTGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

DEAD/DEAH box helicase (DEAD)

(293-408)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

RecG wedge domain (RecG_wedge)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.444

97.829

0.493
  recG/mmsA Streptococcus pneumoniae R6

40.208

97.54

0.392
  recG/mmsA Streptococcus pneumoniae R36A

40.208

97.54

0.392
  recG Bacillus subtilis subsp. subtilis str. 168

39.227

97.395

0.382