Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO/pilO   Type   Machinery gene
Locus tag   WHX55_RS01910 Genome accession   NZ_CP148752
Coordinates   423356..423979 (+) Length   207 a.a.
NCBI ID   WP_150756785.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain AB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 418356..428979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX55_RS01895 (WHX55_01895) - 419073..421514 (-) 2442 WP_150754721.1 penicillin-binding protein 1A -
  WHX55_RS01900 (WHX55_01900) comM 421729..422793 (+) 1065 WP_353741923.1 pilus assembly protein PilM Machinery gene
  WHX55_RS01905 (WHX55_01905) - 422793..423359 (+) 567 WP_150756786.1 PilN domain-containing protein -
  WHX55_RS01910 (WHX55_01910) comO/pilO 423356..423979 (+) 624 WP_150756785.1 type 4a pilus biogenesis protein PilO Machinery gene
  WHX55_RS01915 (WHX55_01915) - 423976..424503 (+) 528 WP_353741924.1 pilus assembly protein PilP -
  WHX55_RS01920 (WHX55_01920) pilQ 424517..426586 (+) 2070 WP_353741925.1 type IV pilus secretin PilQ Machinery gene
  WHX55_RS01925 (WHX55_01925) aroK 426591..427109 (+) 519 WP_045061936.1 shikimate kinase AroK -
  WHX55_RS01930 (WHX55_01930) aroB 427261..428361 (+) 1101 WP_095942362.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23100.47 Da        Isoelectric Point: 4.4584

>NTDB_id=873474 WHX55_RS01910 WP_150756785.1 423356..423979(+) (comO/pilO) [Pseudomonas fluorescens strain AB1]
MSPSEWFEGLRKIDINDLDTSNMGSWPPAIKFLVAGLLMFLVLALGYNFSSRDLVSQLDLKREEESTLKEQFADKARMAA
NLDLYTQQLKEMENAFGVLLRQLPGDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVAQPFYIELPIQITVTGDYHDLATF
VSGVAGLPRIVTLHDFDLAPVSPEGGPKLRLTILAKTYRYSDKGQHQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=873474 WHX55_RS01910 WP_150756785.1 423356..423979(+) (comO/pilO) [Pseudomonas fluorescens strain AB1]
ATGAGTCCGTCCGAATGGTTCGAAGGGCTGCGCAAGATCGACATCAATGATCTGGATACCAGCAACATGGGTTCCTGGCC
GCCGGCGATCAAGTTTCTGGTGGCCGGGTTGCTCATGTTTCTGGTGCTGGCCCTGGGCTACAACTTTTCCAGTCGCGACC
TTGTGAGCCAGCTCGATCTCAAGCGCGAGGAAGAGTCGACACTCAAGGAACAGTTCGCCGACAAGGCCCGCATGGCGGCG
AATCTGGATCTCTACACCCAGCAGTTGAAGGAGATGGAGAACGCCTTCGGCGTGCTGTTGCGGCAACTGCCCGGCGACAC
CGAAGTGCCCGGCTTGCTGGAAGACATCACGCGTACGGGTCTGGGCAGTGGCCTGGAGTTCGAAGAGATCAAGTTGCTGC
CGGAGGTCGCCCAGCCGTTCTACATCGAACTGCCGATCCAGATCACGGTCACCGGGGATTACCACGACCTGGCTACCTTC
GTCAGTGGTGTGGCCGGGTTGCCGCGAATCGTCACCTTGCACGATTTCGATCTTGCGCCCGTCAGCCCCGAGGGTGGTCC
GAAGCTGCGCTTGACCATCCTCGCCAAGACCTACCGCTACAGCGACAAGGGACAGCATCAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(61-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO/pilO Acinetobacter baylyi ADP1

46.809

90.821

0.425
  pilO Acinetobacter baumannii D1279779

45.503

91.304

0.415
  pilO Legionella pneumophila strain ERS1305867

43.005

93.237

0.401