Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RB216_RS17380 Genome accession   NZ_CP133298
Coordinates   3770832..3773057 (-) Length   741 a.a.
NCBI ID   WP_308907657.1    Uniprot ID   -
Organism   Pseudomonas canadensis strain GZH03     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3765832..3778057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB216_RS17345 murB 3766237..3767256 (-) 1020 WP_068936826.1 UDP-N-acetylmuramate dehydrogenase -
  RB216_RS17350 - 3767253..3767717 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  RB216_RS17355 kdsB 3767717..3768481 (-) 765 WP_028616766.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RB216_RS17360 - 3768478..3768663 (-) 186 WP_003174668.1 Trm112 family protein -
  RB216_RS17365 lpxK 3768688..3769698 (-) 1011 WP_028616767.1 tetraacyldisaccharide 4'-kinase -
  RB216_RS17370 - 3769698..3770126 (-) 429 WP_010209650.1 biopolymer transporter ExbD -
  RB216_RS17375 exbB 3770123..3770758 (-) 636 WP_016978182.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RB216_RS17380 comA 3770832..3773057 (-) 2226 WP_308907657.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RB216_RS17385 - 3773193..3773708 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  RB216_RS17390 - 3773705..3775075 (-) 1371 WP_122683830.1 sensor histidine kinase -
  RB216_RS17395 - 3775062..3775790 (-) 729 WP_308907658.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80477.45 Da        Isoelectric Point: 10.4398

>NTDB_id=873368 RB216_RS17380 WP_308907657.1 3770832..3773057(-) (comA) [Pseudomonas canadensis strain GZH03]
MRTGMCAFALGLLALRFLPALPTTGWLIALLVLALMLLPFRTYPLAFFLFGLSWACMSAQWALDDRLKPVLDGQTRWVEG
RVSGLPQQTDEGVRFVLTDSRSRNARLPTHIRVSWRGGPPVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPAANAWRDSVRQRLLAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFTTALGYGLLAGFGVPVQRACVMVGLVLLWRLRLRHLGLWWPLLLALNGVLILEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQVWTRPQWLIAIGLFPALLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGTALLALPFVGEGLLWLAGGALGALFNGLAWLAGQMPAWIPADVPLGYWLVSLLGAVLLLLPKGVPFRVLGWPMFLLAV
FPPRALVPDGQVEVTQLDVGQGQSLILRTRHHTLLYDAGPRSGTFDLGARVVLPSLRKLGVGELDMLLLSHADADHAGGA
AAIANGMPIKRVVGGEIEGLPPSLATQPCTSGERWIWDGVTFELWQWPDAISGNAKSCVLQVQANGERLLLTGDIGRAAE
QAMLASPLAVPTDWLQAPHHGSRSSSSWPFVERLAPRSVLISRGRNNAFGHPHPQVMERYQRLGSQVYDSAEQGAVRLQL
GAFTPPIVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=873368 RB216_RS17380 WP_308907657.1 3770832..3773057(-) (comA) [Pseudomonas canadensis strain GZH03]
ATGAGGACAGGGATGTGCGCGTTTGCGCTGGGGCTGCTGGCCTTGCGCTTTTTACCGGCATTGCCGACGACCGGTTGGCT
GATCGCCTTGCTGGTGCTGGCCCTGATGCTGTTGCCGTTTCGCACGTATCCCTTGGCTTTTTTCCTGTTTGGGCTGAGTT
GGGCGTGCATGAGCGCGCAGTGGGCGCTGGATGATCGCCTCAAGCCAGTACTGGACGGTCAGACGCGCTGGGTGGAAGGG
CGGGTCAGCGGGCTTCCGCAACAGACGGACGAGGGCGTGCGCTTTGTACTGACCGACAGTCGGTCGCGTAATGCCCGGTT
GCCCACGCACATCCGGGTGTCCTGGCGTGGCGGGCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCCGTCACCCTCA
AGCGGCCCGCCGGGTTGCTGAACTTCCACGGCTTTGATCAGGAGGCTTGGCTGCTGGCCCAGCGCATTGGCGCCACCGGT
ACGGTAAAGGATGGAGAGCGCCTGGCACCGGCTGCCAACGCCTGGCGCGACAGTGTGCGTCAGCGTTTGCTTGCGGTGGA
CGCCCAAGGCCGGGAGGCTGGCCTGATTGCCCTGGTGTTGGGCGATGGCTCTGGATTGGCGGCTGCTGATTGGCAGGTGC
TGCAGGATACAGGGACTGTGCATTTGCTGGTCATCTCCGGCCAGCATATCGGCCTGCTGGCGGGGTTGATTTACGGTTTG
ATCGCTGGCTTGGCGCGCTATGGATGCTGGCCTCGAACCTGGCCATGGCTGCCCTGGGCTTGTGGGCTGGCGTTCACTAC
GGCGCTGGGTTACGGCTTGCTGGCTGGATTTGGCGTGCCGGTGCAGCGCGCCTGCGTGATGGTTGGGCTGGTGTTGTTGT
GGCGATTGCGCTTGCGTCACCTGGGGCTGTGGTGGCCTTTGTTGCTGGCGCTCAATGGGGTGCTGATCCTGGAGCCGTTG
GCCAGCTTGCAGCCGGGGTTCTGGCTGTCCTTTGCGGCGGTTGCGGTGCTGATCCTGGCGTTTGGTGGCCGTCTGGGACC
CTGGAGCCTGTGGCAGGTGTGGACTCGGCCGCAGTGGTTGATTGCCATCGGGTTGTTTCCGGCCTTGCTGGTGTTGGGGC
TGCCCATTAGCCTGAGTGCGCCGTTTGCCAACCTGGTGGCGGTGCCATGGATCAGCCTGGTGGTGTTGCCGCTGGCCTTG
TTGGGCACTGCATTGCTGGCGTTGCCGTTTGTAGGGGAAGGTCTGCTGTGGCTGGCGGGCGGGGCACTGGGTGCCTTGTT
CAACGGCTTGGCGTGGCTCGCCGGACAGATGCCGGCCTGGATTCCGGCCGATGTACCGCTGGGGTATTGGTTGGTAAGTC
TGCTGGGCGCAGTGCTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGTGTGTTGGGTTGGCCGATGTTTCTGCTGGCGGTG
TTTCCCCCACGAGCGCTGGTGCCCGACGGACAGGTGGAGGTGACGCAGCTTGATGTCGGCCAGGGGCAATCGTTGATTTT
GCGCACCCGTCATCACACGTTGCTCTACGACGCCGGCCCGCGTTCCGGCACATTCGACTTGGGTGCGCGCGTGGTACTGC
CGTCTTTGCGAAAGCTCGGGGTAGGAGAGCTGGATATGCTGCTGCTCAGCCACGCCGATGCCGATCACGCCGGGGGTGCA
GCGGCGATTGCCAATGGCATGCCGATCAAGCGTGTGGTGGGCGGAGAAATTGAAGGTCTGCCCCCATCGCTCGCCACCCA
GCCTTGCACCAGCGGCGAGCGCTGGATCTGGGACGGTGTGACCTTCGAACTCTGGCAGTGGCCGGACGCCATAAGTGGCA
ACGCGAAGTCCTGCGTCTTGCAGGTGCAGGCCAATGGCGAGCGCCTGCTGCTGACCGGTGATATTGGCCGTGCGGCGGAA
CAGGCCATGCTTGCGTCACCGCTGGCGGTGCCCACCGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGTTCTTCGTC
CTGGCCCTTTGTGGAACGGCTTGCTCCGCGATCCGTGCTGATCTCGCGAGGGCGCAACAATGCGTTCGGCCATCCCCATC
CACAGGTGATGGAACGCTACCAGCGGTTGGGCAGCCAGGTATATGACAGCGCCGAGCAGGGCGCTGTACGTCTGCAGTTG
GGTGCTTTTACGCCCCCGATAGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAGCGGTTACCCTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.278

97.166

0.586
  comA Ralstonia pseudosolanacearum GMI1000

34.293

100

0.37