Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RB216_RS17375 Genome accession   NZ_CP133298
Coordinates   3770123..3770758 (-) Length   211 a.a.
NCBI ID   WP_016978182.1    Uniprot ID   A0A223VS35
Organism   Pseudomonas canadensis strain GZH03     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3765123..3775758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB216_RS17340 - 3765503..3766174 (+) 672 WP_016977342.1 Bax inhibitor-1/YccA family protein -
  RB216_RS17345 murB 3766237..3767256 (-) 1020 WP_068936826.1 UDP-N-acetylmuramate dehydrogenase -
  RB216_RS17350 - 3767253..3767717 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  RB216_RS17355 kdsB 3767717..3768481 (-) 765 WP_028616766.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RB216_RS17360 - 3768478..3768663 (-) 186 WP_003174668.1 Trm112 family protein -
  RB216_RS17365 lpxK 3768688..3769698 (-) 1011 WP_028616767.1 tetraacyldisaccharide 4'-kinase -
  RB216_RS17370 - 3769698..3770126 (-) 429 WP_010209650.1 biopolymer transporter ExbD -
  RB216_RS17375 exbB 3770123..3770758 (-) 636 WP_016978182.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RB216_RS17380 comA 3770832..3773057 (-) 2226 WP_308907657.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RB216_RS17385 - 3773193..3773708 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  RB216_RS17390 - 3773705..3775075 (-) 1371 WP_122683830.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.05 Da        Isoelectric Point: 7.3615

>NTDB_id=873367 RB216_RS17375 WP_016978182.1 3770123..3770758(-) (exbB) [Pseudomonas canadensis strain GZH03]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=873367 RB216_RS17375 WP_016978182.1 3770123..3770758(-) (exbB) [Pseudomonas canadensis strain GZH03]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTTCGCGCCAGCCGCGTGACCCCCGAGCATTTGCTGGGGCAGGTCTGGTCCTGGATCAAGAACA
AACAGCTCGATAAGGAAAAACTCAAGGAGCTGCGCGCCAATTCCCCGTTGGGTGAGATCCTCGCTGCCGGGCTGGCCAAT
TCCAAGCACGGTCGCGAGATTATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGCGTCATCCATGAACTGGAACGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGTTGCTCGGCTTGCTCGGTACGGTGTTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCCGGCATGACCACCAACGCGGCCGTACTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCC
GCAGGCCTGATGGTGGGTATCCCCTCGGTGTTCTTCCACCGCTTCCTGCAACGCCGTATCGATGAGCTTGTGGTGGGCAT
GGAGCAGGAAGCCATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223VS35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848