Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU35_RS23390 Genome accession   NZ_CP148579
Coordinates   4779021..4779650 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1322HEC0003     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4774021..4784650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU35_RS23370 (WHU35_23375) ycbZ 4774411..4776171 (-) 1761 WP_000156526.1 Lon protease family protein -
  WHU35_RS23375 (WHU35_23380) matP 4776357..4776809 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  WHU35_RS23380 (WHU35_23385) ompA 4776884..4777936 (-) 1053 WP_000750419.1 porin OmpA -
  WHU35_RS23385 (WHU35_23390) sulA 4778293..4778802 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WHU35_RS23390 (WHU35_23395) sxy/tfoX 4779021..4779650 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU35_RS23395 (WHU35_23400) yccS 4779613..4781775 (-) 2163 WP_000875023.1 YccS family putative transporter -
  WHU35_RS23400 (WHU35_23405) yccF 4781785..4782231 (-) 447 WP_001261231.1 YccF domain-containing protein -
  WHU35_RS23405 (WHU35_23410) helD 4782354..4784408 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=873227 WHU35_RS23390 WP_000839153.1 4779021..4779650(+) (sxy/tfoX) [Escherichia coli strain Z1322HEC0003]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=873227 WHU35_RS23390 WP_000839153.1 4779021..4779650(+) (sxy/tfoX) [Escherichia coli strain Z1322HEC0003]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1