Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RCF35_RS16845 Genome accession   NZ_CP133277
Coordinates   3444183..3444518 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain NBNZ-0060     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3439183..3449518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF35_RS16825 (RCF35_16825) gcvT 3439790..3440890 (-) 1101 WP_032874033.1 glycine cleavage system aminomethyltransferase GcvT -
  RCF35_RS16830 (RCF35_16830) - 3441313..3442983 (+) 1671 WP_032874031.1 DEAD/DEAH box helicase -
  RCF35_RS16835 (RCF35_16835) - 3443005..3443799 (+) 795 WP_007612541.1 YqhG family protein -
  RCF35_RS16840 (RCF35_16840) sinI 3443976..3444149 (+) 174 WP_032874029.1 anti-repressor SinI Regulator
  RCF35_RS16845 (RCF35_16845) sinR 3444183..3444518 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  RCF35_RS16850 (RCF35_16850) tasA 3444566..3445351 (-) 786 WP_032874027.1 biofilm matrix protein TasA -
  RCF35_RS16855 (RCF35_16855) sipW 3445416..3446000 (-) 585 WP_032874025.1 signal peptidase I SipW -
  RCF35_RS16860 (RCF35_16860) tapA 3445972..3446643 (-) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  RCF35_RS16865 (RCF35_16865) - 3446902..3447231 (+) 330 WP_032874021.1 DUF3889 domain-containing protein -
  RCF35_RS16870 (RCF35_16870) - 3447272..3447451 (-) 180 WP_022552966.1 YqzE family protein -
  RCF35_RS16875 (RCF35_16875) comGG 3447508..3447885 (-) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  RCF35_RS16880 (RCF35_16880) comGF 3447886..3448386 (-) 501 WP_223204419.1 competence type IV pilus minor pilin ComGF -
  RCF35_RS16885 (RCF35_16885) comGE 3448295..3448609 (-) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  RCF35_RS16890 (RCF35_16890) comGD 3448593..3449030 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  RCF35_RS16895 (RCF35_16895) comGC 3449020..3449328 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=873226 RCF35_RS16845 WP_003153104.1 3444183..3444518(+) (sinR) [Bacillus velezensis strain NBNZ-0060]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=873226 RCF35_RS16845 WP_003153104.1 3444183..3444518(+) (sinR) [Bacillus velezensis strain NBNZ-0060]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991