Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   RCF35_RS02425 Genome accession   NZ_CP133277
Coordinates   469408..470097 (-) Length   229 a.a.
NCBI ID   WP_196770545.1    Uniprot ID   -
Organism   Bacillus velezensis strain NBNZ-0060     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 464408..475097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF35_RS02390 (RCF35_02390) fliW 464499..464930 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  RCF35_RS02395 (RCF35_02395) - 464960..465529 (-) 570 WP_007407476.1 DUF6470 family protein -
  RCF35_RS02400 (RCF35_02400) flgL 465620..466537 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  RCF35_RS02405 (RCF35_02405) flgK 466549..468066 (-) 1518 WP_032876170.1 flagellar hook-associated protein FlgK -
  RCF35_RS02410 (RCF35_02410) - 468082..468564 (-) 483 WP_032876168.1 flagellar protein FlgN -
  RCF35_RS02415 (RCF35_02415) flgM 468579..468845 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  RCF35_RS02420 (RCF35_02420) - 468915..469334 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  RCF35_RS02425 (RCF35_02425) comFC 469408..470097 (-) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  RCF35_RS02430 (RCF35_02430) - 470103..470387 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  RCF35_RS02435 (RCF35_02435) comFA 470445..471830 (-) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  RCF35_RS02440 (RCF35_02440) - 471939..472787 (-) 849 WP_032876160.1 DegV family protein -
  RCF35_RS02445 (RCF35_02445) degU 472885..473574 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RCF35_RS02450 (RCF35_02450) degS 473651..474814 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25274.96 Da        Isoelectric Point: 8.4871

>NTDB_id=873174 RCF35_RS02425 WP_196770545.1 469408..470097(-) (comFC) [Bacillus velezensis strain NBNZ-0060]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=873174 RCF35_RS02425 WP_196770545.1 469408..470097(-) (comFC) [Bacillus velezensis strain NBNZ-0060]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594