Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RCG25_RS00265 Genome accession   NZ_CP133269
Coordinates   53274..53807 (+) Length   177 a.a.
NCBI ID   WP_308081683.1    Uniprot ID   -
Organism   Neobacillus sp. PS2-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 48274..58807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG25_RS00245 (RCG25_00245) - 48926..49123 (+) 198 WP_308081680.1 DUF951 domain-containing protein -
  RCG25_RS00250 (RCG25_00250) - 49174..51162 (+) 1989 WP_308081681.1 molybdopterin-dependent oxidoreductase -
  RCG25_RS00255 (RCG25_00255) ychF 51495..52595 (+) 1101 WP_308081682.1 redox-regulated ATPase YchF -
  RCG25_RS00260 (RCG25_00260) rpsF 52912..53199 (+) 288 WP_307283115.1 30S ribosomal protein S6 -
  RCG25_RS00265 (RCG25_00265) ssbA 53274..53807 (+) 534 WP_308081683.1 single-stranded DNA-binding protein Machinery gene
  RCG25_RS00270 (RCG25_00270) rpsR 53861..54100 (+) 240 WP_024030263.1 30S ribosomal protein S18 -
  RCG25_RS00275 (RCG25_00275) - 54219..55163 (+) 945 WP_308081684.1 YybS family protein -
  RCG25_RS00280 (RCG25_00280) - 55189..57162 (+) 1974 WP_308081686.1 DHH family phosphoesterase -
  RCG25_RS00285 (RCG25_00285) rplI 57159..57608 (+) 450 WP_308081687.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19464.31 Da        Isoelectric Point: 5.2939

>NTDB_id=873120 RCG25_RS00265 WP_308081683.1 53274..53807(+) (ssbA) [Neobacillus sp. PS2-9]
MMNRVVLVGRLTKDPDLRYTPNGVPVATFTLAVNRPFSSQAGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQTR
NYEGQDGKRVYVTEVQAESVQFLEPKSSSGGGGGRGDNDHFGAPPREPQGNQYGGGNQNQRQYQNQNQNQNKGFTRVDED
PFAGNGQIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=873120 RCG25_RS00265 WP_308081683.1 53274..53807(+) (ssbA) [Neobacillus sp. PS2-9]
ATGATGAATCGTGTCGTGCTTGTTGGCCGTTTAACAAAAGATCCTGATTTGCGCTATACGCCAAATGGGGTTCCTGTTGC
TACCTTTACTCTAGCAGTTAATCGACCATTTTCTAGTCAAGCAGGTGAACGTGAAGCAGACTTTATTAATTGTGTTGTTT
GGCGTAAACCGGCTGAAAATGTAGCGAACTTCTTGAAAAAGGGCAGTCTTGCAGGTGTTGATGGTCGTATTCAAACCCGC
AACTATGAAGGACAAGATGGTAAACGTGTTTACGTTACAGAGGTTCAAGCAGAGAGCGTTCAGTTCTTAGAACCTAAAAG
CTCGTCTGGTGGCGGCGGTGGAAGAGGCGACAATGATCATTTCGGTGCACCCCCACGGGAACCGCAAGGAAACCAATACG
GAGGCGGCAATCAGAATCAGCGCCAGTACCAAAACCAAAACCAAAACCAAAATAAAGGTTTTACTCGTGTGGATGAAGAT
CCATTTGCAGGAAATGGACAAATTGACATTTCCGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.641

100

0.661
  ssb Latilactobacillus sakei subsp. sakei 23K

54.494

100

0.548
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

59.887

0.379