Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RCG17_RS13090 Genome accession   NZ_CP133268
Coordinates   2588476..2588994 (-) Length   172 a.a.
NCBI ID   WP_308175554.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2583476..2593994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG17_RS13070 (RCG17_13070) rplI 2584695..2585144 (-) 450 WP_308175550.1 50S ribosomal protein L9 -
  RCG17_RS13075 (RCG17_13075) - 2585141..2587114 (-) 1974 WP_308175551.1 DHH family phosphoesterase -
  RCG17_RS13080 (RCG17_13080) - 2587133..2588077 (-) 945 WP_308175552.1 YybS family protein -
  RCG17_RS13085 (RCG17_13085) rpsR 2588197..2588439 (-) 243 WP_308175553.1 30S ribosomal protein S18 -
  RCG17_RS13090 (RCG17_13090) ssbA 2588476..2588994 (-) 519 WP_308175554.1 single-stranded DNA-binding protein Machinery gene
  RCG17_RS13095 (RCG17_13095) rpsF 2589066..2589353 (-) 288 WP_308175555.1 30S ribosomal protein S6 -
  RCG17_RS13100 (RCG17_13100) ychF 2589524..2590624 (-) 1101 WP_308175556.1 redox-regulated ATPase YchF -
  RCG17_RS13105 (RCG17_13105) - 2590762..2592747 (-) 1986 WP_308175557.1 molybdopterin-dependent oxidoreductase -
  RCG17_RS13110 (RCG17_13110) - 2592823..2593023 (-) 201 WP_308175558.1 DUF951 domain-containing protein -
  RCG17_RS13115 (RCG17_13115) - 2593038..2593925 (-) 888 WP_308175559.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18971.77 Da        Isoelectric Point: 4.7821

>NTDB_id=873095 RCG17_RS13090 WP_308175554.1 2588476..2588994(-) (ssbA) [Neobacillus sp. PS3-12]
MINRCVLVGRLTKDPELRYTPNGVAVATFTLAVNRQFSNQQGEREADFLNIVVWRKAAENVANFLKKGSLAGVDGRIQVR
TYEQDGKRQYFTEIVADNVQFLEPKGSAGGGRGNDYGAPPMEPSGNPYGGSNQNQRQNNNNNNNNNQGFTRVDEDPFAGN
GQIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=873095 RCG17_RS13090 WP_308175554.1 2588476..2588994(-) (ssbA) [Neobacillus sp. PS3-12]
ATGATCAATCGTTGTGTACTTGTTGGTCGTTTAACAAAAGACCCTGAATTAAGATACACACCAAATGGTGTTGCTGTTGC
TACCTTCACACTTGCTGTAAATCGTCAATTTTCAAATCAGCAAGGTGAACGAGAAGCAGACTTCCTTAATATTGTCGTTT
GGCGCAAGGCAGCAGAAAATGTTGCAAACTTCCTGAAAAAAGGAAGCTTGGCAGGTGTAGACGGAAGAATTCAGGTTCGT
ACTTACGAGCAAGATGGAAAACGTCAATATTTTACCGAGATTGTAGCAGACAATGTTCAGTTTCTTGAGCCTAAAGGATC
CGCAGGCGGCGGAAGAGGCAACGATTATGGTGCCCCACCTATGGAACCATCAGGAAATCCATATGGCGGCAGCAATCAGA
ATCAACGACAAAACAATAACAATAACAATAATAACAATCAGGGTTTTACCAGAGTGGATGAGGATCCGTTCGCAGGAAAC
GGTCAAATTGACATTTCCGATGATGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.221

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

53.933

100

0.558
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366