Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   RCG20_RS16430 Genome accession   NZ_CP133266
Coordinates   3354011..3354211 (+) Length   66 a.a.
NCBI ID   WP_308181188.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-40     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 3349011..3359211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG20_RS16400 (RCG20_16400) - 3349541..3350263 (+) 723 WP_308181182.1 YwiC-like family protein -
  RCG20_RS16405 (RCG20_16405) - 3350446..3351138 (-) 693 WP_308181183.1 Crp/Fnr family transcriptional regulator -
  RCG20_RS16410 (RCG20_16410) - 3351466..3351645 (+) 180 WP_308181184.1 YjzC family protein -
  RCG20_RS16415 (RCG20_16415) - 3351873..3352055 (-) 183 WP_308181185.1 YjzD family protein -
  RCG20_RS16420 (RCG20_16420) - 3352266..3352985 (+) 720 WP_308181186.1 hydrolase -
  RCG20_RS16425 (RCG20_16425) - 3353067..3353909 (+) 843 WP_308181187.1 hypothetical protein -
  RCG20_RS16430 (RCG20_16430) comZ 3354011..3354211 (+) 201 WP_308181188.1 ComZ family protein Regulator
  RCG20_RS16435 (RCG20_16435) - 3354240..3354482 (-) 243 WP_308181189.1 hypothetical protein -
  RCG20_RS16440 (RCG20_16440) - 3354683..3355615 (+) 933 WP_308181190.1 beta-ketoacyl-ACP synthase III -
  RCG20_RS16445 (RCG20_16445) fabF 3355674..3356912 (+) 1239 WP_308181191.1 beta-ketoacyl-ACP synthase II -
  RCG20_RS16450 (RCG20_16450) - 3357043..3357822 (+) 780 WP_308181192.1 DUF2268 domain-containing protein -
  RCG20_RS16455 (RCG20_16455) - 3358099..3359094 (+) 996 WP_308181193.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 66 a.a.        Molecular weight: 7668.83 Da        Isoelectric Point: 4.3021

>NTDB_id=873033 RCG20_RS16430 WP_308181188.1 3354011..3354211(+) (comZ) [Neobacillus sp. PS3-40]
MNNQEQSLQFMQIALKYLPQAKEQLDKAGVELSFDIIQPFMDLFSKVMQEAYELGKNDALKELTKE

Nucleotide


Download         Length: 201 bp        

>NTDB_id=873033 RCG20_RS16430 WP_308181188.1 3354011..3354211(+) (comZ) [Neobacillus sp. PS3-40]
ATGAATAATCAAGAACAATCACTACAATTTATGCAGATTGCCTTAAAATATTTGCCGCAAGCAAAAGAACAGTTGGATAA
AGCAGGGGTCGAATTATCATTTGATATTATTCAGCCATTTATGGATTTGTTTTCAAAAGTTATGCAGGAAGCTTACGAGC
TAGGTAAGAATGATGCACTTAAGGAATTGACAAAGGAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(5-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

67.797

89.394

0.606