Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RCG20_RS11210 Genome accession   NZ_CP133266
Coordinates   2306719..2307231 (-) Length   170 a.a.
NCBI ID   WP_308180258.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2301719..2312231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG20_RS11190 (RCG20_11190) rplI 2302873..2303322 (-) 450 WP_308180253.1 50S ribosomal protein L9 -
  RCG20_RS11195 (RCG20_11195) - 2303319..2305292 (-) 1974 WP_308180254.1 DHH family phosphoesterase -
  RCG20_RS11200 (RCG20_11200) - 2305317..2306261 (-) 945 WP_308180256.1 YybS family protein -
  RCG20_RS11205 (RCG20_11205) rpsR 2306437..2306676 (-) 240 WP_308180257.1 30S ribosomal protein S18 -
  RCG20_RS11210 (RCG20_11210) ssbA 2306719..2307231 (-) 513 WP_308180258.1 single-stranded DNA-binding protein Machinery gene
  RCG20_RS11215 (RCG20_11215) rpsF 2307305..2307592 (-) 288 WP_308184326.1 30S ribosomal protein S6 -
  RCG20_RS11220 (RCG20_11220) ychF 2307783..2308883 (-) 1101 WP_308180259.1 redox-regulated ATPase YchF -
  RCG20_RS11225 (RCG20_11225) - 2309052..2311055 (-) 2004 WP_308180260.1 molybdopterin-dependent oxidoreductase -
  RCG20_RS11230 (RCG20_11230) - 2311301..2311498 (-) 198 WP_308180261.1 DUF951 family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18961.75 Da        Isoelectric Point: 4.9994

>NTDB_id=873018 RCG20_RS11210 WP_308180258.1 2306719..2307231(-) (ssbA) [Neobacillus sp. PS3-40]
MMNRVVLVGRLTKDPDLRYTPNGVPVATFTLAVNRSFSNQQGEKETDFINCVVWRRPAENVANFLKKGSLAGVDGRIQTR
NYEGQDGKRVYVTEVSAESVQFLEPKNSSGGRSDSDQFGAPREQKAPYGNNNQNQRPNNNNNNNQGFTRMDEDPFAGNGQ
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=873018 RCG20_RS11210 WP_308180258.1 2306719..2307231(-) (ssbA) [Neobacillus sp. PS3-40]
ATGATGAATCGTGTTGTGCTTGTCGGACGTTTAACAAAAGATCCTGATTTGCGTTATACACCAAATGGAGTTCCTGTTGC
TACTTTCACCCTTGCCGTAAATCGGTCATTTTCAAATCAGCAAGGTGAAAAAGAAACAGACTTTATTAACTGTGTTGTTT
GGCGGCGTCCAGCAGAAAATGTTGCTAATTTTTTAAAAAAAGGCAGCCTAGCTGGAGTTGATGGTCGCATACAAACTCGC
AACTACGAAGGACAAGATGGCAAGCGTGTCTATGTTACTGAAGTCTCGGCAGAGAGTGTTCAATTCCTTGAACCTAAAAA
CTCATCTGGTGGAAGAAGTGACAGCGATCAGTTTGGTGCTCCCAGGGAACAAAAAGCTCCTTATGGAAACAACAATCAGA
ATCAACGACCAAATAATAATAATAATAATAACCAAGGTTTTACTCGGATGGACGAGGATCCTTTTGCAGGAAATGGGCAA
ATTGACATCTCTGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.363

100

0.688
  ssb Latilactobacillus sakei subsp. sakei 23K

51.064

100

0.565
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

62.353

0.394